Os03g0298600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os03g0298600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 11.17 | 0.157 | 12.4 | 0.536 | 0.456 | -0.347 | 0.304 | 0.594 | 0.13 | 0.951 | 25.82 | 23 | -- | -- |
| 11.26 | 0.158 | 12.4 | 0.472 | 0.467 | -0.297 | 0.246 | -- | 0.111 | 1.03 | 26.3 | 20 | -- | -- |
| 11.5 | 0.158 | 12.4 | 0.497 | 0.452 | -0.349 | -- | 0.329 | 0.117 | 0.949 | 26.08 | 24 | -- | -- |
| 11.51 | 0.158 | 12.4 | 0.466 | 0.464 | -0.314 | -- | -- | 0.11 | 0.993 | 26.29 | 19 | -- | -- |
| 20.58 | 0.212 | 12.3 | 0.61 | -- | -0.743 | -- | 0.683 | 0.181 | -- | 24.96 | 10 | -- | -- |
| 12.54 | 0.166 | 12.4 | 0.433 | 0.555 | -- | 0.311 | -- | 0.102 | 1.34 | -- | -- | -- | -- |
| 12.93 | 0.168 | 12.4 | 0.423 | 0.555 | -- | -- | -- | 0.1 | 1.35 | -- | -- | -- | -- |
| 20.76 | 0.212 | 12.3 | 0.541 | -- | -0.679 | -- | -- | 0.174 | -- | 24.6 | 9 | -- | -- |
| 17.03 | 0.193 | 12.4 | -- | 0.503 | -0.202 | -- | -- | 0.0557 | 1.2 | 26.4 | 27 | -- | -- |
| 31.91 | 0.264 | 12.4 | 0.445 | -- | -- | -- | -- | 0.112 | -- | -- | -- | -- | -- |
| 17.64 | 0.196 | 12.4 | -- | 0.562 | -- | -- | -- | 0.0529 | 1.38 | -- | -- | -- | -- |
| 28.18 | 0.248 | 12.4 | -- | -- | -0.618 | -- | -- | 0.0939 | -- | 25.08 | 9 | -- | -- |
| 37.12 | 0.284 | 12.4 | -- | -- | -- | -- | -- | 0.0623 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 10.69 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 6 | 9 |
| 7 | 10.73 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 24 | 1 |
| 10 | 10.79 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 8 |
| 11 | 10.80 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 19 | 6 |
| 14 | 10.81 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 24 | 1 |
| 18 | 10.83 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 33 | 10.86 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 71 | 10.91 | temperature | 25.0 | 270 | > th | dose dependent | sin | 4 | NA |
| 79 | 10.91 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 21 | 20 |
| 89 | 10.93 | temperature | 25.0 | 90 | > th | dose dependent | sin | 1 | NA |
| 109 | 10.95 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 5 | 3 |
| 117 | 10.96 | wind | 1.0 | 4320 | > th | dose independent | rect. | 17 | 3 |
| 128 | 10.97 | temperature | 25.0 | 270 | > th | dose independent | rect. | 23 | 6 |
| 225 | 11.04 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 10 | 6 |
| 236 | 11.05 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 11 | 1 |
| 252 | 11.06 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 282 | 11.08 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 284 | 11.08 | temperature | 30.0 | 10 | < th | dose independent | rect. | 11 | 3 |
| 285 | 11.08 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 8 | 4 |
| 291 | 11.08 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 19 | 7 |
| 320 | 11.10 | wind | 1.0 | 4320 | < th | dose independent | rect. | 17 | 3 |
| 350 | 11.11 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 12 | 23 |
| 365 | 11.13 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 4 |
| 368 | 11.13 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 20 | 4 |
| 386 | 11.14 | humidity | 80.0 | 4320 | < th | dose dependent | sin | 10 | NA |
| 388 | 11.14 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 9 | 2 |
| 407 | 11.14 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 431 | 11.16 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 19 | 17 |
| 459 | 11.17 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 19 | 14 |
| 518 | 11.20 | radiation | 40.0 | 270 | < th | dose independent | rect. | 6 | 23 |
| 537 | 11.21 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 9 | 2 |
| 560 | 11.21 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 7 | 16 |
| 561 | 11.21 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 5 | 18 |
| 564 | 11.22 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 2 | 1 |
| 577 | 11.22 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 19 | 17 |
| 631 | 11.23 | radiation | 30.0 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 636 | 11.24 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 15 |
| 637 | 11.24 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 15 |
| 643 | 11.24 | wind | 1.0 | 4320 | < th | dose dependent | rect. | 17 | 3 |
| 651 | 11.24 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 15 |
| 665 | 11.25 | temperature | 25.0 | 270 | < th | dose independent | rect. | 8 | 6 |
| 673 | 11.25 | radiation | 40.0 | 270 | > th | dose independent | rect. | 12 | 23 |
| 675 | 11.25 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 9 | 2 |
| 743 | 11.27 | radiation | 1.0 | 30 | > th | dose independent | rect. | 12 | 23 |
| 745 | 11.27 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 785 | 11.28 | radiation | 40.0 | 270 | > th | dose independent | sin | 12 | NA |
| 798 | 11.28 | radiation | 40.0 | 270 | < th | dose independent | rect. | 15 | 23 |
| 834 | 11.29 | humidity | 80.0 | 4320 | < th | dose independent | sin | 11 | NA |
| 836 | 11.29 | radiation | 40.0 | 270 | < th | dose independent | no | NA | NA |
| 837 | 11.29 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 2 | 1 |
| 880 | 11.30 | radiation | 40.0 | 270 | < th | dose independent | sin | 1 | NA |
| 881 | 11.30 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 1 | NA |
| 882 | 11.30 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 1 | NA |
| 885 | 11.30 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 5 | 3 |
| 886 | 11.30 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 5 | 5 |
| 887 | 11.30 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 5 | 5 |
| 904 | 11.30 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 2 | NA |
| 905 | 11.30 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 1 | NA |
| 910 | 11.30 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 5 | 3 |
| 913 | 11.30 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 5 | 5 |
| 914 | 11.30 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 5 | 5 |
| 939 | 11.30 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 5 | 23 |
| 942 | 11.31 | humidity | 80.0 | 4320 | > th | dose independent | sin | 11 | NA |
| 947 | 11.31 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 2 |
| 963 | 11.31 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 4 | 2 |