FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0297900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Laccase precursor (EC 1.10.3.2).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.88 (0.0273) R2 : 0.000665
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0317 (0.0576) R2dN8 : 0.000858 R2N8 : 0.000665
σ : 0.515
deviance : 121.76
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
111.84 0.497 2.9 -0.404 0.086 -0.814 -0.735 1.44 0.053 6.72 0.004128 2840 -- --
113.08 0.495 2.88 -0.397 0.0927 -0.628 -0.789 -- 0.0376 6.74 0.1804 3000 -- --
113.02 0.495 2.9 -0.427 0.108 -0.872 -- 1.69 0.0658 7.46 0.5015 2797 -- --
114.23 0.498 2.88 -0.371 0.128 -0.589 -- -- 0.0491 9.79 0.5 2980 -- --
113.5 0.496 2.91 -0.42 -- -0.857 -- 1.65 0.0577 -- 0.4656 2795 -- --
117.87 0.509 2.89 -0.245 0.121 -- -0.669 -- 0.000334 7.84 -- -- -- --
118.9 0.511 2.89 -0.26 0.133 -- -- -- 0.00269 9.86 -- -- -- --
115.07 0.5 2.88 -0.407 -- -0.613 -- -- 0.0456 -- 0.4926 2980 -- --
117.88 0.506 2.87 -- 0.128 -0.504 -- -- 0.0764 10.1 0.3421 3170 -- --
119.96 0.512 2.89 -0.261 -- -- -- -- 0.00274 -- -- -- -- --
120.68 0.514 2.88 -- 0.134 -- -- -- 0.0316 10 -- -- -- --
118.86 0.508 2.87 -- -- -0.498 -- -- 0.0746 -- 0.4789 3120 -- --
121.76 0.515 2.88 -- -- -- -- -- 0.0317 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 108.03 precipitation 0.1 90 > th dose independent rect. 23 3
2 108.03 precipitation 0.1 90 > th dose dependent rect. 23 3
7 108.17 temperature 20.0 30 < th dose dependent rect. 1 1
28 108.69 precipitation 0.1 10 > th dose independent rect. 1 1
38 108.69 precipitation 0.1 10 > th dose dependent rect. 1 1
50 108.83 temperature 20.0 90 < th dose independent rect. 1 1
85 109.41 humidity 90.0 4320 > th dose dependent rect. 19 2
105 110.01 humidity 90.0 4320 > th dose independent rect. 19 1
116 110.30 humidity 60.0 30 > th dose independent rect. 3 8
127 110.84 radiation 40.0 30 < th dose independent rect. 3 8
132 110.91 wind 5.0 90 > th dose independent rect. 11 3
144 111.22 wind 3.0 90 > th dose dependent rect. 11 2
147 111.23 wind 3.0 90 > th dose dependent rect. 10 4
156 111.34 atmosphere 995.0 14400 > th dose independent rect. 12 2
197 111.37 humidity 50.0 10 > th dose independent rect. 11 16
199 111.41 temperature 10.0 10 > th dose dependent rect. 3 8
222 111.65 wind 7.0 10 < th dose independent rect. 3 8
227 111.68 temperature 10.0 30 > th dose independent rect. 3 8
230 111.68 atmosphere 995.0 30 > th dose independent rect. 3 8
231 111.68 atmosphere 1015.0 30 < th dose independent rect. 3 8
232 111.68 precipitation 0.1 30 < th dose independent rect. 3 8
233 111.68 temperature 10.0 30 > th dose independent rect. 11 16
234 111.68 precipitation 0.1 30 < th dose dependent rect. 3 8
250 111.77 precipitation 0.1 30 < th dose independent rect. 11 16
251 111.77 precipitation 0.1 30 < th dose dependent rect. 11 16
253 111.79 radiation 1.0 14400 < th dose dependent rect. 1 3
256 111.81 atmosphere 995.0 30 > th dose independent rect. 11 16
258 111.83 wind 3.0 10 > th dose independent rect. 2 1
267 111.86 wind 9.0 30 < th dose independent rect. 11 16
276 111.92 temperature 30.0 30 < th dose independent rect. 3 8
284 111.95 wind 9.0 30 < th dose dependent rect. 3 8
287 111.98 temperature 30.0 30 < th dose dependent rect. 12 1
290 111.99 wind 5.0 90 > th dose independent rect. 4 10
298 112.04 temperature 10.0 1440 > th dose independent rect. 4 8
301 112.04 atmosphere 995.0 1440 > th dose independent rect. 4 8
302 112.04 temperature 10.0 1440 > th dose independent rect. 12 16
308 112.08 wind 3.0 90 > th dose dependent rect. 4 10
318 112.13 wind 5.0 90 > th dose independent rect. 1 13
319 112.13 wind 1.0 30 > th dose independent rect. 11 16
330 112.19 wind 5.0 90 > th dose independent rect. 21 17
347 112.24 wind 3.0 90 > th dose dependent rect. 1 13
350 112.25 wind 3.0 90 > th dose dependent rect. 21 17
351 112.26 atmosphere 1000.0 90 > th dose independent rect. 13 11
354 112.27 humidity 90.0 4320 > th dose dependent rect. 9 14
356 112.28 wind 3.0 90 > th dose dependent rect. 7 7
358 112.29 wind 5.0 90 > th dose independent rect. 23 15
368 112.31 wind 3.0 90 > th dose dependent rect. 23 15
370 112.34 humidity 60.0 30 > th dose independent rect. 6 5
371 112.34 atmosphere 1000.0 10 > th dose independent rect. 14 10
378 112.36 humidity 60.0 90 > th dose independent rect. 11 2
379 112.36 atmosphere 1015.0 90 < th dose independent rect. 13 11
380 112.36 radiation 40.0 90 < th dose independent rect. 13 11
402 112.44 temperature 30.0 10 < th dose independent rect. 3 21
403 112.44 humidity 60.0 30 > th dose independent rect. 13 22
404 112.44 radiation 40.0 30 < th dose independent rect. 13 22
409 112.45 wind 1.0 90 > th dose independent rect. 24 13
415 112.46 wind 9.0 90 < th dose independent rect. 13 22
416 112.47 wind 3.0 720 > th dose independent rect. 4 1
434 112.52 atmosphere 1000.0 90 > th dose independent rect. 11 2
436 112.52 wind 1.0 10 > th dose independent rect. 14 10
438 112.52 temperature 10.0 90 > th dose dependent rect. 13 22
445 112.56 radiation 40.0 30 < th dose independent rect. 6 5
451 112.58 atmosphere 1015.0 10 < th dose independent rect. 14 10
456 112.60 humidity 50.0 90 > th dose independent rect. 24 13
460 112.61 temperature 10.0 90 > th dose independent rect. 11 2
462 112.61 atmosphere 1015.0 90 < th dose independent rect. 11 2
463 112.61 precipitation 0.1 90 < th dose independent rect. 11 2
464 112.61 temperature 10.0 90 > th dose independent rect. 13 22
466 112.61 precipitation 0.1 90 < th dose dependent rect. 11 2
467 112.62 radiation 10.0 90 > th dose independent rect. 11 2
475 112.63 humidity 50.0 10 > th dose independent rect. 24 14
477 112.64 wind 9.0 90 < th dose independent rect. 11 2
483 112.65 precipitation 0.1 90 < th dose independent rect. 13 22
485 112.65 precipitation 0.1 90 < th dose dependent rect. 13 22
489 112.67 atmosphere 1015.0 30 < th dose independent rect. 11 16
492 112.68 wind 1.0 90 > th dose independent rect. 13 11
493 112.68 wind 3.0 720 > th dose dependent rect. 4 3
494 112.68 atmosphere 995.0 30 > th dose dependent rect. 3 8
501 112.70 temperature 10.0 90 > th dose independent rect. 13 11
502 112.70 temperature 10.0 90 > th dose independent rect. 24 13
503 112.70 atmosphere 995.0 90 > th dose independent rect. 24 13
505 112.70 wind 3.0 720 > th dose dependent rect. 4 1
507 112.71 atmosphere 1005.0 10 < th dose dependent rect. 5 1
511 112.72 atmosphere 1015.0 90 < th dose independent rect. 24 13
515 112.72 wind 9.0 90 > th dose dependent rect. 20 15
525 112.75 wind 1.0 30 > th dose independent rect. 11 19
529 112.76 wind 1.0 90 > th dose independent rect. 24 2
532 112.76 wind 9.0 90 < th dose independent rect. 13 11
537 112.77 precipitation 0.1 90 < th dose independent rect. 13 11
538 112.77 precipitation 0.1 90 < th dose dependent rect. 13 11
539 112.78 humidity 90.0 4320 < th dose independent rect. 18 3
543 112.79 precipitation 0.1 90 < th dose independent rect. 24 13
544 112.79 atmosphere 1015.0 90 < th dose independent rect. 13 22
545 112.79 precipitation 0.1 90 < th dose dependent rect. 24 13
552 112.81 temperature 30.0 90 < th dose independent rect. 11 2
558 112.83 atmosphere 995.0 90 > th dose independent rect. 13 22
562 112.84 humidity 90.0 4320 > th dose independent rect. 12 10
574 112.86 wind 9.0 90 < th dose independent rect. 24 13
581 112.88 wind 9.0 10 < th dose independent rect. 14 10
592 112.90 radiation 40.0 30 < th dose independent rect. 3 21
596 112.90 wind 3.0 10 > th dose dependent rect. 21 17
600 112.91 humidity 50.0 30 > th dose dependent rect. 3 8
603 112.92 humidity 90.0 4320 > th dose dependent sin 19 NA
608 112.93 temperature 10.0 10 > th dose independent rect. 14 10
609 112.93 temperature 10.0 10 > th dose independent rect. 24 14
610 112.93 atmosphere 995.0 10 > th dose independent rect. 24 14
618 112.94 atmosphere 995.0 90 > th dose dependent rect. 11 2
620 112.95 humidity 50.0 10 > th dose independent rect. 11 3
622 112.95 precipitation 0.1 10 < th dose independent rect. 14 10
626 112.95 precipitation 0.1 10 < th dose dependent rect. 14 10
630 112.96 wind 9.0 90 > th dose independent rect. 18 17
633 112.96 radiation 1.0 720 < th dose dependent rect. 18 9
635 112.97 wind 9.0 90 > th dose independent rect. 20 15
643 112.99 wind 1.0 270 > th dose independent rect. 13 9
651 113.01 wind 5.0 720 > th dose independent rect. 6 1
659 113.02 temperature 10.0 10 > th dose dependent rect. 14 21
694 113.07 atmosphere 1015.0 10 < th dose independent rect. 24 14
696 113.07 atmosphere 1015.0 30 < th dose independent rect. 3 21
704 113.09 wind 9.0 10 < th dose independent rect. 24 14
737 113.14 temperature 30.0 10 < th dose independent rect. 12 1
750 113.15 wind 7.0 10 < th dose independent rect. 14 21
751 113.15 precipitation 0.1 10 < th dose independent rect. 14 21
759 113.15 precipitation 0.1 10 < th dose dependent rect. 14 21
780 113.17 humidity 50.0 30 > th dose dependent rect. 6 5
783 113.18 humidity 80.0 270 > th dose independent rect. 6 1
790 113.18 radiation 40.0 10 < th dose dependent rect. 3 21
795 113.19 wind 5.0 10 > th dose independent rect. 21 17
804 113.20 atmosphere 1000.0 10 > th dose independent rect. 11 3
811 113.21 wind 9.0 10 < th dose dependent rect. 14 21
829 113.23 radiation 10.0 10 < th dose independent rect. 3 21
835 113.24 precipitation 0.1 4320 < th dose independent rect. 15 11
839 113.24 atmosphere 1000.0 90 > th dose dependent rect. 24 2
843 113.24 precipitation 0.1 4320 < th dose dependent rect. 15 11
856 113.26 humidity 90.0 4320 > th dose independent rect. 9 13
872 113.27 humidity 50.0 90 > th dose dependent rect. 11 2
877 113.28 humidity 80.0 270 > th dose independent rect. 3 5
891 113.29 humidity 50.0 270 > th dose independent rect. 22 15
894 113.29 temperature 30.0 270 < th dose dependent rect. 10 3
904 113.30 precipitation 0.1 4320 > th dose independent rect. 15 11
914 113.31 atmosphere 1000.0 30 > th dose independent rect. 24 3
934 113.32 radiation 1.0 720 < th dose independent rect. 18 9
936 113.32 precipitation 0.1 10 < th dose independent rect. 3 21
938 113.32 precipitation 0.1 10 < th dose dependent rect. 3 21
943 113.33 humidity 60.0 30 > th dose independent rect. 13 11
956 113.34 atmosphere 1015.0 10 < th dose independent rect. 14 21
965 113.35 wind 7.0 30 < th dose independent rect. 24 3
967 113.35 temperature 10.0 30 > th dose independent rect. 24 3
969 113.35 temperature 30.0 30 < th dose independent rect. 24 3
970 113.35 humidity 50.0 30 > th dose independent rect. 24 3
974 113.35 radiation 1.0 30 < th dose independent rect. 24 3
993 113.35 wind 9.0 30 < th dose independent rect. 3 21
994 113.35 temperature 10.0 30 > th dose independent rect. 3 21
998 113.35 radiation 1.0 30 < th dose dependent rect. 24 3