Os03g0297800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os03g0297800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.92 | 0.373 | 3.12 | -0.366 | 0.119 | 1.11 | -0.471 | -1.81 | 0.0563 | 2.5 | 0.4162 | 830 | -- | -- |
| 63.01 | 0.37 | 3.11 | -0.326 | 0.114 | 0.59 | -0.464 | -- | 0.0578 | 2.48 | 0.6686 | 852 | -- | -- |
| 63.69 | 0.372 | 3.12 | -0.354 | 0.118 | 1.1 | -- | -1.94 | 0.0575 | 1.95 | 0.4291 | 831 | -- | -- |
| 63.28 | 0.37 | 3.11 | -0.314 | 0.125 | 0.542 | -- | -- | 0.0565 | 1.87 | 0.6906 | 1141 | -- | -- |
| 64.23 | 0.373 | 3.12 | -0.37 | -- | 1.09 | -- | -1.95 | 0.0538 | -- | 0.5 | 1141 | -- | -- |
| 65.74 | 0.38 | 3.11 | -0.246 | 0.142 | -- | -0.344 | -- | 0.0391 | 2.24 | -- | -- | -- | -- |
| 66.16 | 0.381 | 3.11 | -0.236 | 0.141 | -- | -- | -- | 0.0413 | 1.74 | -- | -- | -- | -- |
| 64.27 | 0.373 | 3.11 | -0.313 | -- | 0.521 | -- | -- | 0.0615 | -- | 0.8622 | 1192 | -- | -- |
| 65.76 | 0.378 | 3.1 | -- | 0.126 | 0.401 | -- | -- | 0.0876 | 1.66 | 0.828 | 1198 | -- | -- |
| 67.37 | 0.384 | 3.11 | -0.23 | -- | -- | -- | -- | 0.0445 | -- | -- | -- | -- | -- |
| 67.62 | 0.385 | 3.11 | -- | 0.137 | -- | -- | -- | 0.0676 | 1.69 | -- | -- | -- | -- |
| 66.71 | 0.38 | 3.1 | -- | -- | 0.403 | -- | -- | 0.0908 | -- | 0.8933 | 1190 | -- | -- |
| 68.76 | 0.387 | 3.1 | -- | -- | -- | -- | -- | 0.07 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 57.31 | radiation | 30 | 10 | > th | dose independent | rect. | 15 | 1 |
| 17 | 59.39 | radiation | 30 | 10 | > th | dose dependent | rect. | 15 | 1 |
| 51 | 59.82 | wind | 7 | 10 | > th | dose dependent | rect. | 16 | 1 |
| 53 | 60.13 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 14 | 2 |
| 56 | 60.25 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 14 | 1 |
| 83 | 60.74 | wind | 7 | 90 | > th | dose independent | rect. | 14 | 2 |
| 143 | 61.50 | wind | 7 | 14400 | > th | dose dependent | rect. | 13 | 2 |
| 149 | 61.58 | wind | 7 | 90 | > th | dose dependent | rect. | 14 | 1 |
| 155 | 61.64 | wind | 5 | 14400 | > th | dose dependent | rect. | 11 | 5 |
| 156 | 61.65 | wind | 9 | 14400 | < th | dose independent | rect. | 13 | 2 |
| 163 | 61.69 | wind | 1 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 168 | 61.73 | temperature | 30 | 10 | > th | dose independent | rect. | 15 | 1 |
| 173 | 61.75 | wind | 7 | 14400 | > th | dose independent | rect. | 11 | 5 |
| 174 | 61.77 | wind | 7 | 14400 | < th | dose independent | rect. | 11 | 5 |
| 196 | 61.89 | atmosphere | 1000 | 30 | < th | dose independent | rect. | 10 | 7 |
| 214 | 61.92 | temperature | 30 | 270 | < th | dose independent | rect. | 22 | 23 |
| 259 | 62.08 | wind | 9 | 14400 | < th | dose dependent | rect. | 11 | 3 |
| 287 | 62.16 | wind | 7 | 30 | > th | dose independent | rect. | 15 | 5 |
| 297 | 62.17 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 303 | 62.18 | wind | 7 | 14400 | > th | dose independent | rect. | 5 | 11 |
| 304 | 62.18 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 10 |
| 306 | 62.19 | wind | 3 | 720 | > th | dose independent | rect. | 18 | 2 |
| 323 | 62.21 | radiation | 1 | 90 | > th | dose independent | rect. | 18 | 1 |
| 368 | 62.26 | wind | 3 | 90 | > th | dose dependent | rect. | 18 | 1 |
| 381 | 62.29 | wind | 7 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 411 | 62.32 | wind | 9 | 14400 | < th | dose independent | rect. | 24 | 15 |
| 424 | 62.34 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 8 | 9 |
| 457 | 62.37 | humidity | 80 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 459 | 62.37 | wind | 7 | 10 | > th | dose dependent | rect. | 14 | 3 |
| 472 | 62.39 | wind | 3 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 486 | 62.40 | wind | 9 | 14400 | > th | dose independent | rect. | 20 | 19 |
| 495 | 62.41 | wind | 9 | 14400 | > th | dose independent | rect. | 24 | 15 |
| 523 | 62.44 | radiation | 40 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 529 | 62.44 | wind | 7 | 14400 | > th | dose dependent | sin | 0 | NA |
| 545 | 62.45 | wind | 9 | 14400 | > th | dose dependent | rect. | 20 | 19 |
| 611 | 62.49 | wind | 9 | 14400 | < th | dose independent | rect. | 20 | 19 |
| 619 | 62.49 | radiation | 1 | 30 | < th | dose dependent | rect. | 3 | 18 |
| 621 | 62.50 | wind | 7 | 90 | > th | dose independent | rect. | 18 | 1 |
| 660 | 62.52 | humidity | 70 | 270 | > th | dose independent | rect. | 20 | 13 |
| 666 | 62.52 | humidity | 70 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 679 | 62.53 | wind | 7 | 30 | > th | dose independent | rect. | 15 | 14 |
| 683 | 62.53 | radiation | 40 | 43200 | > th | dose independent | rect. | 13 | 22 |
| 690 | 62.54 | radiation | 40 | 43200 | > th | dose independent | sin | 7 | NA |
| 694 | 62.54 | radiation | 40 | 43200 | > th | dose independent | sin | 4 | NA |
| 751 | 62.55 | radiation | 40 | 43200 | > th | dose independent | sin | 0 | NA |
| 755 | 62.55 | radiation | 40 | 43200 | > th | dose independent | no | NA | NA |
| 965 | 62.56 | radiation | 40 | 43200 | > th | dose independent | sin | 22 | NA |
| 968 | 62.56 | radiation | 40 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 979 | 62.56 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 18 | 2 |
| 982 | 62.57 | radiation | 40 | 43200 | > th | dose independent | sin | 20 | NA |