Os03g0295600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os03g0295600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.18 | 0.323 | 8.05 | -0.707 | 0.886 | -0.716 | 0.511 | 0.237 | -0.649 | 5.79 | 5.233 | 1479 | -- | -- |
| 47.24 | 0.32 | 8.05 | -0.689 | 0.882 | -0.729 | 0.51 | -- | -0.644 | 5.8 | 4.937 | 1478 | -- | -- |
| 47.79 | 0.322 | 8.05 | -0.703 | 0.887 | -0.714 | -- | 0.186 | -0.651 | 5.91 | 5.051 | 1470 | -- | -- |
| 47.82 | 0.322 | 8.05 | -0.684 | 0.885 | -0.708 | -- | -- | -0.644 | 5.95 | 4.92 | 1466 | -- | -- |
| 88.34 | 0.438 | 8.06 | -0.653 | -- | -0.765 | -- | -0.0798 | -0.62 | -- | 4.695 | 1457 | -- | -- |
| 55.53 | 0.349 | 8.02 | -0.592 | 0.899 | -- | 0.487 | -- | -0.519 | 6.09 | -- | -- | -- | -- |
| 56.1 | 0.351 | 8.02 | -0.587 | 0.901 | -- | -- | -- | -0.521 | 6.16 | -- | -- | -- | -- |
| 88.34 | 0.438 | 8.06 | -0.658 | -- | -0.751 | -- | -- | -0.623 | -- | 4.92 | 1457 | -- | -- |
| 58.4 | 0.356 | 8.03 | -- | 0.905 | -0.567 | -- | -- | -0.574 | 5.89 | 9.41 | 1498 | -- | -- |
| 98.22 | 0.463 | 8.03 | -0.562 | -- | -- | -- | -- | -0.501 | -- | -- | -- | -- | -- |
| 65.18 | 0.378 | 8 | -- | 0.893 | -- | -- | -- | -0.455 | 6.19 | -- | -- | -- | -- |
| 98.39 | 0.462 | 8.04 | -- | -- | -0.544 | -- | -- | -0.541 | -- | 8.75 | 1463 | -- | -- |
| 106.54 | 0.482 | 8.02 | -- | -- | -- | -- | -- | -0.438 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.83 | humidity | 90 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 2 | 46.89 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 11 |
| 4 | 47.08 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 10 |
| 5 | 47.09 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 4 |
| 7 | 47.13 | radiation | 40 | 720 | < th | dose dependent | rect. | 15 | 2 |
| 44 | 47.78 | humidity | 50 | 720 | > th | dose dependent | rect. | 6 | 20 |
| 46 | 47.80 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 54 | 47.84 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 10 |
| 62 | 47.86 | radiation | 40 | 720 | < th | dose dependent | rect. | 15 | 10 |
| 77 | 47.96 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 2 |
| 79 | 47.97 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 2 |
| 85 | 48.04 | humidity | 80 | 720 | < th | dose independent | rect. | 18 | 3 |
| 91 | 48.08 | radiation | 30 | 720 | < th | dose independent | rect. | 14 | 4 |
| 109 | 48.17 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 10 |
| 120 | 48.21 | humidity | 90 | 720 | < th | dose independent | rect. | 18 | 5 |
| 141 | 48.30 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 4 |
| 142 | 48.31 | humidity | 50 | 720 | > th | dose dependent | sin | 17 | NA |
| 147 | 48.33 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 2 |
| 160 | 48.36 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 175 | 48.41 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 227 | 48.53 | radiation | 20 | 720 | < th | dose independent | rect. | 15 | 11 |
| 229 | 48.54 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 6 |
| 234 | 48.56 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 249 | 48.61 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 3 |
| 256 | 48.63 | temperature | 30 | 14400 | < th | dose independent | rect. | 17 | 12 |
| 258 | 48.63 | temperature | 30 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 261 | 48.64 | temperature | 30 | 14400 | > th | dose independent | rect. | 16 | 3 |
| 262 | 48.64 | temperature | 30 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 307 | 48.66 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 310 | 48.67 | humidity | 70 | 720 | > th | dose independent | sin | 15 | NA |
| 325 | 48.69 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 347 | 48.70 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 22 |
| 349 | 48.70 | temperature | 30 | 14400 | > th | dose dependent | rect. | 15 | 2 |
| 351 | 48.70 | temperature | 30 | 14400 | > th | dose dependent | rect. | 15 | 4 |
| 369 | 48.71 | temperature | 30 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 381 | 48.71 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 10 |
| 401 | 48.72 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 20 |
| 408 | 48.72 | humidity | 90 | 1440 | < th | dose dependent | rect. | 3 | 14 |
| 415 | 48.73 | temperature | 30 | 14400 | > th | dose dependent | sin | 13 | NA |
| 418 | 48.73 | radiation | 10 | 1440 | < th | dose dependent | sin | 22 | NA |
| 422 | 48.73 | humidity | 50 | 1440 | > th | dose dependent | rect. | 8 | 9 |
| 432 | 48.74 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 23 |
| 438 | 48.75 | temperature | 30 | 14400 | > th | dose independent | rect. | 16 | 20 |
| 492 | 48.76 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 20 |
| 503 | 48.77 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 6 |
| 528 | 48.77 | humidity | 90 | 1440 | < th | dose dependent | rect. | 2 | 17 |
| 543 | 48.78 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 9 |
| 590 | 48.80 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 20 |
| 625 | 48.81 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 9 |
| 649 | 48.82 | humidity | 70 | 1440 | < th | dose independent | sin | 16 | NA |
| 653 | 48.82 | wind | 9 | 43200 | < th | dose independent | rect. | 15 | 8 |
| 658 | 48.82 | humidity | 90 | 1440 | < th | dose dependent | rect. | 15 | 2 |
| 698 | 48.83 | wind | 9 | 43200 | > th | dose independent | rect. | 15 | 8 |
| 703 | 48.83 | temperature | 30 | 14400 | > th | dose dependent | no | NA | NA |
| 709 | 48.83 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 766 | 48.83 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 18 |
| 816 | 48.83 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 22 |
| 838 | 48.84 | radiation | 10 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 849 | 48.84 | humidity | 50 | 1440 | > th | dose dependent | rect. | 3 | 16 |
| 853 | 48.85 | temperature | 30 | 14400 | < th | dose independent | sin | 11 | NA |
| 859 | 48.85 | radiation | 10 | 1440 | > th | dose independent | rect. | 13 | 21 |
| 896 | 48.86 | temperature | 30 | 14400 | > th | dose independent | sin | 11 | NA |
| 901 | 48.86 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 943 | 48.88 | radiation | 1 | 720 | > th | dose independent | rect. | 10 | 20 |
| 947 | 48.88 | humidity | 50 | 1440 | > th | dose dependent | sin | 0 | NA |