Os03g0294900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ubiquitin-activating enzyme E1 3.
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Os03g0294900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ubiquitin-activating enzyme E1 3.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.57 | 0.28 | 10.3 | 0.905 | 1.72 | -0.607 | 0.155 | -0.644 | 0.133 | 19.7 | 23.21 | 89 | -- | -- |
| 37.1 | 0.284 | 10.3 | 0.913 | 1.73 | -0.655 | -0.211 | -- | 0.122 | 19.8 | 23.14 | 89 | -- | -- |
| 35.63 | 0.278 | 10.3 | 0.903 | 1.72 | -0.618 | -- | -0.601 | 0.133 | 19.7 | 23.43 | 89 | -- | -- |
| 37.22 | 0.284 | 10.3 | 0.913 | 1.72 | -0.633 | -- | -- | 0.13 | 19.7 | 23.58 | 91 | -- | -- |
| 69.3 | 0.388 | 10.3 | 1.52 | -- | -1.89 | -- | 1.4 | 0.129 | -- | 10 | 772 | -- | -- |
| 43.92 | 0.311 | 10.3 | 0.949 | 1.67 | -- | 0.143 | -- | 0.173 | 18.4 | -- | -- | -- | -- |
| 43.97 | 0.311 | 10.3 | 0.947 | 1.67 | -- | -- | -- | 0.174 | 18.4 | -- | -- | -- | -- |
| 47.55 | 0.321 | 10.3 | 0.827 | -- | -2.17 | -- | -- | 0.075 | -- | 4.2 | 784 | -- | -- |
| 58.87 | 0.357 | 10.3 | -- | 1.66 | -0.706 | -- | -- | 0.0355 | 20 | 21.83 | 147 | -- | -- |
| 189.18 | 0.643 | 10.3 | 0.904 | -- | -- | -- | -- | 0.138 | -- | -- | -- | -- | -- |
| 67.63 | 0.385 | 10.3 | -- | 1.66 | -- | -- | -- | 0.0683 | 18.4 | -- | -- | -- | -- |
| 65.16 | 0.376 | 10.3 | -- | -- | -2.21 | -- | -- | -0.0125 | -- | 3.263 | 794 | -- | -- |
| 210.74 | 0.678 | 10.3 | -- | -- | -- | -- | -- | 0.038 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.33 | radiation | 30.0 | 270 | < th | dose independent | rect. | 12 | 18 |
| 3 | 33.53 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 4 | 33.54 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 1 | 17 |
| 5 | 33.59 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 13 | 17 |
| 16 | 33.82 | radiation | 10.0 | 270 | < th | dose dependent | sin | 5 | NA |
| 22 | 33.90 | radiation | 10.0 | 270 | > th | dose independent | sin | 5 | NA |
| 36 | 34.10 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 9 |
| 53 | 34.26 | radiation | 1.0 | 270 | < th | dose dependent | sin | 2 | NA |
| 63 | 34.28 | wind | 7.0 | 270 | < th | dose independent | rect. | 5 | 22 |
| 74 | 34.36 | wind | 7.0 | 90 | < th | dose independent | rect. | 8 | 19 |
| 84 | 34.41 | radiation | 10.0 | 90 | > th | dose independent | rect. | 8 | 8 |
| 87 | 34.44 | radiation | 10.0 | 10 | > th | dose independent | rect. | 8 | 23 |
| 91 | 34.45 | radiation | 10.0 | 10 | > th | dose independent | rect. | 8 | 10 |
| 125 | 34.48 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 19 |
| 132 | 34.53 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 1 | 14 |
| 152 | 34.61 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 169 | 34.68 | radiation | 10.0 | 270 | < th | dose independent | rect. | 1 | 17 |
| 175 | 34.69 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 3 | 18 |
| 176 | 34.70 | humidity | 90.0 | 10 | < th | dose dependent | sin | 3 | NA |
| 178 | 34.71 | radiation | 10.0 | 270 | > th | dose independent | rect. | 17 | 21 |
| 179 | 34.71 | radiation | 10.0 | 270 | < th | dose independent | rect. | 24 | 21 |
| 181 | 34.72 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 22 |
| 185 | 34.72 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 22 |
| 209 | 34.79 | radiation | 1.0 | 270 | < th | dose independent | sin | 2 | NA |
| 215 | 34.81 | temperature | 15.0 | 270 | > th | dose independent | rect. | 15 | 15 |
| 217 | 34.81 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 228 | 34.84 | radiation | 10.0 | 270 | > th | dose independent | rect. | 6 | 8 |
| 243 | 34.84 | wind | 9.0 | 270 | < th | dose dependent | rect. | 6 | 9 |
| 250 | 34.86 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 8 | 8 |
| 291 | 34.97 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 8 | 19 |
| 294 | 34.97 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 8 | 19 |
| 299 | 34.99 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 19 |
| 302 | 34.99 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 19 |
| 315 | 35.03 | humidity | 50.0 | 270 | > th | dose independent | rect. | 14 | 16 |
| 323 | 35.05 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 326 | 35.05 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 3 | 19 |
| 330 | 35.06 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 3 | 19 |
| 337 | 35.08 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 3 | 5 |
| 355 | 35.12 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 14 | 16 |
| 378 | 35.14 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 23 | 17 |
| 382 | 35.15 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 7 |
| 414 | 35.20 | temperature | 15.0 | 270 | > th | dose independent | rect. | 6 | 9 |
| 415 | 35.20 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 9 |
| 417 | 35.20 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 9 |
| 422 | 35.21 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 437 | 35.24 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 5 |
| 446 | 35.26 | wind | 7.0 | 10 | < th | dose independent | rect. | 8 | 19 |
| 448 | 35.26 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 2 |
| 452 | 35.27 | radiation | 10.0 | 270 | < th | dose independent | sin | 7 | NA |
| 456 | 35.27 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 22 | 5 |
| 472 | 35.30 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 485 | 35.33 | radiation | 20.0 | 90 | < th | dose independent | rect. | 3 | 19 |
| 487 | 35.34 | wind | 7.0 | 90 | < th | dose independent | rect. | 8 | 7 |
| 500 | 35.36 | wind | 7.0 | 90 | < th | dose independent | rect. | 8 | 9 |
| 509 | 35.37 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 514 | 35.37 | temperature | 15.0 | 270 | > th | dose independent | rect. | 5 | 22 |
| 524 | 35.39 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 9 |
| 563 | 35.42 | wind | 5.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 567 | 35.42 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 8 |
| 570 | 35.42 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 589 | 35.45 | wind | 5.0 | 90 | < th | dose independent | rect. | 3 | 5 |
| 601 | 35.47 | wind | 7.0 | 10 | < th | dose independent | rect. | 8 | 8 |
| 620 | 35.49 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 1 | 22 |
| 623 | 35.50 | humidity | 80.0 | 90 | < th | dose independent | rect. | 8 | 8 |
| 668 | 35.53 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 1 |
| 673 | 35.53 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 19 |
| 683 | 35.55 | radiation | 10.0 | 10 | < th | dose independent | rect. | 4 | 19 |
| 691 | 35.56 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 5 |
| 697 | 35.56 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 5 |
| 707 | 35.57 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 3 | 5 |
| 719 | 35.59 | temperature | 10.0 | 90 | > th | dose independent | rect. | 3 | 5 |
| 721 | 35.59 | temperature | 30.0 | 90 | < th | dose independent | rect. | 3 | 5 |
| 722 | 35.59 | humidity | 50.0 | 90 | > th | dose independent | rect. | 3 | 5 |
| 724 | 35.59 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 3 | 5 |
| 725 | 35.59 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 3 | 5 |
| 726 | 35.59 | radiation | 40.0 | 90 | < th | dose independent | rect. | 3 | 5 |
| 729 | 35.59 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 15 |
| 730 | 35.59 | temperature | 10.0 | 90 | > th | dose independent | rect. | 8 | 19 |
| 732 | 35.59 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 736 | 35.60 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 2 |
| 751 | 35.60 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 755 | 35.61 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 9 |
| 762 | 35.62 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 764 | 35.62 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 765 | 35.62 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 768 | 35.62 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 769 | 35.62 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 771 | 35.62 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 785 | 35.62 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 801 | 35.63 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 807 | 35.64 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 808 | 35.64 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 5 |
| 811 | 35.64 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 18 |
| 813 | 35.64 | humidity | 50.0 | 90 | > th | dose dependent | sin | 6 | NA |
| 814 | 35.64 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 818 | 35.65 | humidity | 80.0 | 10 | < th | dose independent | rect. | 8 | 8 |
| 829 | 35.66 | radiation | 10.0 | 270 | > th | dose independent | rect. | 8 | 2 |
| 830 | 35.66 | radiation | 10.0 | 270 | < th | dose independent | rect. | 1 | 6 |
| 852 | 35.68 | temperature | 15.0 | 270 | > th | dose independent | rect. | 6 | 19 |
| 863 | 35.69 | wind | 9.0 | 90 | < th | dose dependent | rect. | 3 | 5 |
| 869 | 35.69 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 879 | 35.70 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 3 | 12 |
| 883 | 35.71 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 885 | 35.71 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 886 | 35.71 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 889 | 35.71 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 897 | 35.71 | radiation | 30.0 | 10 | < th | dose independent | rect. | 12 | 20 |
| 949 | 35.75 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 22 | 5 |
| 976 | 35.76 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 990 | 35.77 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 6 | 10 |
| 999 | 35.78 | wind | 9.0 | 270 | < th | dose dependent | rect. | 1 | 5 |