Os03g0294800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ser-thr protein kinase (Fragment).
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Os03g0294800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ser-thr protein kinase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 77.16 | 0.413 | 10.6 | -1.66 | 0.892 | 1.45 | -0.451 | -3.72 | -0.337 | 7.11 | 24.94 | 1278 | -- | -- |
| 82.23 | 0.422 | 10.5 | -0.731 | 0.883 | 1.1 | -0.34 | -- | -0.127 | 6.86 | 24.61 | 1265 | -- | -- |
| 77.56 | 0.41 | 10.6 | -1.63 | 0.896 | 1.45 | -- | -3.54 | -0.352 | 7.12 | 24.58 | 1257 | -- | -- |
| 82.4 | 0.423 | 10.5 | -0.725 | 0.893 | 1.11 | -- | -- | -0.114 | 7.13 | 24.46 | 1231 | -- | -- |
| 118.3 | 0.507 | 10.6 | -1.57 | -- | 1.45 | -- | -3.13 | -0.354 | -- | 24.08 | 1310 | -- | -- |
| 124.06 | 0.522 | 10.5 | -0.348 | 0.933 | -- | -0.217 | -- | 0.039 | 6.32 | -- | -- | -- | -- |
| 124.17 | 0.522 | 10.5 | -0.351 | 0.932 | -- | -- | -- | 0.0396 | 6.29 | -- | -- | -- | -- |
| 122.49 | 0.515 | 10.5 | -0.711 | -- | 1.12 | -- | -- | -0.131 | -- | 23.91 | 1319 | -- | -- |
| 94.09 | 0.452 | 10.5 | -- | 0.904 | 0.933 | -- | -- | 0.0265 | 7.03 | 25.43 | 1213 | -- | -- |
| 169.29 | 0.608 | 10.5 | -0.326 | -- | -- | -- | -- | 0.0598 | -- | -- | -- | -- | -- |
| 127.42 | 0.528 | 10.5 | -- | 0.928 | -- | -- | -- | 0.0787 | 6.31 | -- | -- | -- | -- |
| 134.66 | 0.54 | 10.5 | -- | -- | 0.969 | -- | -- | -0.0109 | -- | 24.4 | 1310 | -- | -- |
| 172.09 | 0.612 | 10.5 | -- | -- | -- | -- | -- | 0.096 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 77.98 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 3 | 78.50 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 6 |
| 15 | 78.92 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 20 |
| 18 | 78.97 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 12 |
| 19 | 78.98 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 14 |
| 22 | 79.00 | temperature | 20 | 270 | > th | dose dependent | rect. | 14 | 18 |
| 56 | 79.40 | temperature | 25 | 1440 | > th | dose dependent | sin | 18 | NA |
| 82 | 79.56 | temperature | 20 | 270 | > th | dose dependent | rect. | 13 | 20 |
| 139 | 80.25 | temperature | 25 | 1440 | > th | dose dependent | rect. | 22 | 21 |
| 142 | 80.26 | temperature | 25 | 1440 | > th | dose dependent | rect. | 24 | 19 |
| 144 | 80.28 | temperature | 25 | 1440 | > th | dose dependent | rect. | 5 | 14 |
| 174 | 80.35 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 19 |
| 182 | 80.36 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 17 |
| 188 | 80.36 | temperature | 25 | 1440 | > th | dose dependent | rect. | 24 | 23 |
| 214 | 80.39 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 392 | 82.57 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 10 |
| 398 | 82.63 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 404 | 82.66 | wind | 5 | 43200 | > th | dose dependent | rect. | 8 | 7 |
| 406 | 82.67 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 465 | 82.94 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 9 |
| 476 | 82.99 | wind | 7 | 43200 | < th | dose independent | rect. | 3 | 12 |
| 491 | 83.03 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 15 |
| 494 | 83.04 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 9 |
| 495 | 83.04 | wind | 7 | 43200 | > th | dose independent | rect. | 3 | 12 |
| 497 | 83.04 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 15 |
| 509 | 83.08 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 19 |
| 512 | 83.09 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 17 |
| 533 | 83.15 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 538 | 83.16 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 551 | 83.20 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 16 |
| 553 | 83.21 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 560 | 83.23 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 19 |
| 566 | 83.27 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 582 | 83.30 | radiation | 20 | 14400 | > th | dose dependent | rect. | 16 | 15 |
| 616 | 83.43 | wind | 7 | 43200 | < th | dose independent | sin | 3 | NA |
| 651 | 83.51 | wind | 7 | 43200 | > th | dose independent | sin | 4 | NA |
| 677 | 83.58 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 723 | 83.72 | wind | 5 | 43200 | > th | dose dependent | sin | 2 | NA |
| 730 | 83.73 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 21 |
| 792 | 83.89 | wind | 5 | 43200 | > th | dose dependent | rect. | 20 | 20 |
| 835 | 83.99 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 2 |