Os03g0294500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Homeodomain-like containing protein.
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Os03g0294500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Homeodomain-like containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 128.59 | 0.533 | 11 | 1.49 | 0.588 | -1.95 | 0.933 | -0.986 | 0.0557 | 7.64 | 21.5 | 3136 | -- | -- |
| 125.04 | 0.521 | 11 | 1.37 | 0.542 | -1.63 | 1.1 | -- | 0.108 | 7.15 | 22.4 | 2219 | -- | -- |
| 126.45 | 0.524 | 11 | 1.19 | 0.519 | -1.62 | -- | -0.597 | 0.0408 | 7.08 | 22.5 | 2230 | -- | -- |
| 127.16 | 0.525 | 11 | 1.39 | 0.52 | -1.63 | -- | -- | 0.101 | 6.99 | 22.42 | 2244 | -- | -- |
| 140.1 | 0.551 | 11.1 | 1.24 | -- | -1.72 | -- | -0.667 | 0.0376 | -- | 22.2 | 2096 | -- | -- |
| 223.93 | 0.702 | 11.1 | 0.718 | 0.593 | -- | 0.939 | -- | -0.498 | 7.81 | -- | -- | -- | -- |
| 226.44 | 0.705 | 11.1 | 0.743 | 0.592 | -- | -- | -- | -0.498 | 7.95 | -- | -- | -- | -- |
| 141.1 | 0.553 | 11 | 1.46 | -- | -1.71 | -- | -- | 0.0996 | -- | 22.12 | 2100 | -- | -- |
| 172.1 | 0.611 | 11.1 | -- | 0.55 | -1.26 | -- | -- | -0.172 | 7.55 | 22.5 | 1937 | -- | -- |
| 245.53 | 0.732 | 11.2 | 0.75 | -- | -- | -- | -- | -0.49 | -- | -- | -- | -- | -- |
| 241.01 | 0.726 | 11.2 | -- | 0.597 | -- | -- | -- | -0.581 | 7.86 | -- | -- | -- | -- |
| 182.33 | 0.629 | 11.1 | -- | -- | -1.22 | -- | -- | -0.219 | -- | 22.3 | 739 | -- | -- |
| 260.35 | 0.753 | 11.2 | -- | -- | -- | -- | -- | -0.574 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 126.53 | temperature | 30 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 2 | 126.62 | temperature | 10 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 9 | 127.52 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 7 |
| 28 | 127.98 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 11 |
| 47 | 128.23 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 7 |
| 71 | 128.50 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 77 | 128.55 | temperature | 25 | 1440 | < th | dose dependent | rect. | 15 | 15 |
| 112 | 128.92 | temperature | 25 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 149 | 129.31 | temperature | 25 | 4320 | < th | dose dependent | sin | 14 | NA |
| 200 | 129.73 | temperature | 10 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 717 | 132.34 | temperature | 10 | 4320 | > th | dose dependent | sin | 12 | NA |
| 877 | 133.11 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 909 | 133.24 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 951 | 133.42 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 960 | 133.45 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 23 |