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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0291700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.5 (0.0278) R2 : 0.316
β1 : -1.06 (0.102) R2dD : 0.169 R2D : 0.151
β2 : 0.738 (0.0721) R2dC : 0.158 R2C : 0.15
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.142 (0.0594) R2dN8 : 0.0114 R2N8 : -0.00831
σ : 0.523
deviance : 124.7
__
_____
C
peak time of C : 6.98
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
109.55 0.492 3.5 -0.787 1.11 2.29 -1.36 -3.01 -0.0163 17 1.809 734 -- --
110.9 0.49 3.52 -0.824 1.09 2.41 0.879 -- -0.0517 17.6 0.6 773 -- --
109.74 0.488 3.52 -0.803 1.16 2.5 -- -1.48 -0.0375 17.6 1.711 773 -- --
112.75 0.495 3.53 -0.841 1.16 2.47 -- -- -0.0587 17.5 0.7353 770 -- --
116.44 0.503 3.52 -0.828 -- 1.16 -- -0.357 -0.0498 -- 1.896 875 -- --
123.64 0.521 3.51 -1.05 0.74 -- -0.642 -- -0.143 6.93 -- -- -- --
124.7 0.523 3.5 -1.06 0.738 -- -- -- -0.142 6.98 -- -- -- --
117.17 0.504 3.51 -0.971 -- 1.13 -- -- -0.0911 -- 2 869 -- --
129.9 0.531 3.53 -- 1.26 2.57 -- -- 0.0183 17.2 0.009996 747 -- --
153.33 0.579 3.52 -1.05 -- -- -- -- -0.128 -- -- -- -- --
154.43 0.581 3.48 -- 0.726 -- -- -- -0.0233 7.07 -- -- -- --
140.67 0.552 3.51 -- -- 1.26 -- -- -0.0122 -- 0.009127 875 -- --
182.24 0.63 3.49 -- -- -- -- -- -0.0117 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 106.65 radiation 1.0 720 < th dose dependent rect. 3 20
4 107.07 radiation 1.0 720 < th dose independent rect. 15 8
7 107.57 radiation 1.0 720 > th dose independent rect. 15 4
17 107.58 radiation 1.0 720 < th dose independent rect. 3 20
23 107.98 radiation 1.0 720 < th dose dependent rect. 15 15
24 107.99 radiation 1.0 720 < th dose independent rect. 15 15
28 108.03 radiation 1.0 720 < th dose dependent rect. 15 8
33 108.21 radiation 1.0 720 < th dose dependent sin 13 NA
36 108.26 radiation 1.0 720 > th dose independent rect. 15 20
37 108.27 radiation 1.0 720 < th dose independent sin 14 NA
40 108.38 radiation 1.0 720 > th dose independent sin 14 NA
50 108.63 radiation 1.0 720 > th dose independent rect. 6 13
61 108.65 radiation 1.0 720 < th dose independent rect. 9 14
67 108.73 radiation 1.0 720 < th dose independent rect. 7 16
94 108.90 radiation 1.0 720 > th dose independent rect. 13 22
99 108.95 radiation 1.0 720 < th dose dependent rect. 10 20
100 108.96 radiation 1.0 720 < th dose independent rect. 10 20
111 109.07 radiation 1.0 720 < th dose dependent rect. 7 16
125 109.17 radiation 1.0 720 < th dose dependent rect. 9 14
223 109.92 humidity 70.0 30 > th dose dependent rect. 5 19
228 109.95 radiation 1.0 720 < th dose dependent rect. 18 23
236 110.01 radiation 1.0 720 < th dose dependent no NA NA
281 110.58 humidity 70.0 30 > th dose dependent rect. 5 21
309 110.71 radiation 1.0 720 > th dose independent no NA NA
360 110.78 radiation 1.0 720 < th dose independent no NA NA
386 110.91 radiation 1.0 720 < th dose dependent rect. 20 23
410 111.04 radiation 1.0 720 < th dose dependent sin 22 NA
419 111.09 radiation 1.0 720 < th dose independent rect. 18 23
422 111.12 atmosphere 1010.0 30 < th dose independent rect. 9 20
428 111.19 humidity 90.0 30 > th dose dependent rect. 5 21
460 111.42 temperature 10.0 720 > th dose dependent rect. 15 3
483 111.59 humidity 50.0 30 > th dose dependent rect. 5 11
489 111.65 humidity 70.0 270 > th dose dependent rect. 2 21
493 111.67 radiation 1.0 720 < th dose independent rect. 20 23
495 111.67 humidity 50.0 270 > th dose dependent rect. 17 13
499 111.70 humidity 80.0 720 < th dose independent rect. 16 2
522 111.88 humidity 80.0 1440 < th dose independent rect. 24 17
524 111.89 humidity 50.0 270 > th dose dependent rect. 1 22
551 112.01 humidity 80.0 1440 < th dose independent rect. 3 14
561 112.05 humidity 70.0 90 > th dose dependent rect. 3 23
587 112.17 humidity 90.0 270 < th dose independent rect. 23 2
616 112.25 humidity 50.0 30 > th dose dependent rect. 5 9
634 112.33 temperature 10.0 30 > th dose dependent rect. 9 20
655 112.43 atmosphere 1005.0 270 > th dose independent rect. 23 3
657 112.44 humidity 50.0 720 > th dose dependent rect. 18 4
666 112.48 humidity 80.0 1440 < th dose independent sin 2 NA
671 112.50 temperature 10.0 30 > th dose dependent rect. 23 6
673 112.52 atmosphere 1010.0 30 < th dose independent rect. 23 6
675 112.52 humidity 80.0 1440 > th dose independent rect. 24 17
687 112.58 humidity 80.0 1440 > th dose independent rect. 3 14
697 112.61 humidity 50.0 720 > th dose dependent rect. 10 20
700 112.62 radiation 40.0 4320 < th dose dependent rect. 24 5
740 112.74 precipitation 0.1 90 < th dose independent rect. 6 23
742 112.74 precipitation 0.1 90 < th dose dependent rect. 6 23
749 112.78 humidity 80.0 1440 > th dose independent rect. 9 8
766 112.85 humidity 80.0 90 > th dose independent rect. 5 1
785 112.92 atmosphere 1005.0 30 > th dose independent rect. 24 5
797 112.94 temperature 10.0 270 > th dose dependent rect. 23 2
804 112.95 humidity 50.0 720 > th dose dependent rect. 18 21
814 112.98 humidity 70.0 30 > th dose dependent rect. 5 15
820 113.00 temperature 25.0 720 > th dose independent rect. 15 3
826 113.01 humidity 90.0 1440 > th dose dependent rect. 16 1
827 113.01 temperature 10.0 30 > th dose dependent rect. 6 23
836 113.05 humidity 90.0 1440 > th dose independent rect. 16 1
844 113.07 humidity 70.0 1440 > th dose dependent rect. 9 8
847 113.08 humidity 80.0 1440 > th dose independent sin 2 NA
849 113.08 wind 9.0 90 < th dose dependent rect. 5 1
850 113.08 humidity 50.0 14400 < th dose dependent rect. 16 1
851 113.08 humidity 70.0 1440 > th dose dependent rect. 10 3
858 113.09 humidity 60.0 90 > th dose dependent rect. 5 1
871 113.12 temperature 30.0 90 < th dose dependent rect. 5 1
879 113.14 atmosphere 1015.0 90 < th dose dependent rect. 5 1
897 113.20 atmosphere 1000.0 30 > th dose dependent rect. 24 5
933 113.31 humidity 90.0 1440 > th dose dependent rect. 15 3
936 113.32 wind 5.0 90 < th dose independent rect. 5 1
951 113.35 humidity 80.0 1440 > th dose independent rect. 10 4
957 113.36 temperature 10.0 90 > th dose independent rect. 5 1
959 113.36 temperature 30.0 90 < th dose independent rect. 5 1
960 113.36 humidity 50.0 90 > th dose independent rect. 5 1
963 113.36 atmosphere 995.0 90 > th dose independent rect. 5 1
964 113.36 atmosphere 1010.0 90 < th dose independent rect. 5 1
966 113.36 radiation 20.0 90 < th dose independent rect. 5 1
969 113.36 precipitation 0.1 90 < th dose independent rect. 5 1
972 113.36 temperature 10.0 90 > th dose independent rect. 6 23
973 113.36 precipitation 0.1 90 < th dose dependent rect. 5 1
989 113.39 humidity 50.0 30 > th dose dependent rect. 5 4
994 113.41 temperature 15.0 30 > th dose independent rect. 23 6