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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0291200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF231, plant domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.95 (0.0332) R2 : 0.169
β1 : 0.595 (0.13) R2dD : 0.0541 R2D : -0.109
β2 : -- (--) R2dC : -- R2C : --
β3 : 30.3 (3.31) R2dE : 6.91 R2E : -6.29
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 140 (15.9) R2dD*E : 6.42 R2D*E : -6.76
γ1 : -0.147 (0.065) R2dN8 : 0.0125 R2N8 : -0.0258
σ : 0.568
deviance : 148.84
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_____
C
peak time of C : --
E
wheather : wind
threshold : 7.014
memory length : 91
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 1.92
open length of G : 6.95

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
146.7 0.569 2.95 0.577 0.159 30.3 -0.457 141 -0.154 2.82 7.03 91 1.94 6.98
174.29 0.62 2.83 -0.0295 0.157 0.399 -0.503 -- -0.169 3.2 6 13 2 7.78
147.67 0.566 2.93 0.579 0.127 30.3 -- 140 -0.127 2.82 7.012 93 1.92 6.95
167.67 0.603 2.83 -0.00112 0.155 1.17 -- -- -0.14 2.98 5 42 2.67 7.45
148.84 0.568 2.95 0.595 -- 30.3 -- 140 -0.147 -- 7.014 91 1.92 6.95
174.6 0.619 2.83 -0.0373 0.164 -- -0.53 -- -0.173 3.21 -- -- -- --
175.3 0.62 2.83 -0.0267 0.178 -- -- -- -0.17 4.53 -- -- -- --
169.04 0.606 2.82 0.0119 -- 1.18 -- -- -0.136 -- 5.019 42 2.72 7.54
167.67 0.603 2.82 -- 0.155 1.17 -- -- -0.14 3.07 5.004 42 2.66 7.55
177 0.622 2.83 -0.0198 -- -- -- -- -0.165 -- -- -- -- --
175.32 0.619 2.83 -- 0.178 -- -- -- -0.167 4.53 -- -- -- --
168.51 0.605 2.82 -- -- 1.18 -- -- -0.137 -- 5.018 42 2.4 7.57
177.01 0.621 2.83 -- -- -- -- -- -0.163 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 147.12 wind 7.0 90 > th dose independent rect. 2 7
3 147.53 wind 7.0 90 > th dose dependent rect. 2 7
7 148.19 wind 7.0 90 > th dose independent rect. 7 2
11 148.23 wind 7.0 90 > th dose dependent rect. 8 1
27 156.43 wind 5.0 90 > th dose independent rect. 22 13
47 159.81 wind 5.0 30 > th dose independent sin 8 NA
88 161.01 wind 5.0 30 > th dose dependent rect. 22 12
92 161.26 wind 5.0 30 < th dose independent sin 8 NA
128 162.08 wind 5.0 90 > th dose independent rect. 22 16
133 162.21 temperature 25.0 10 < th dose dependent rect. 9 1
144 162.37 wind 7.0 14400 > th dose independent rect. 5 5
147 162.45 radiation 20.0 270 > th dose dependent rect. 6 1
162 162.50 wind 5.0 30 > th dose dependent sin 8 NA
170 162.63 wind 7.0 14400 < th dose independent rect. 5 5
179 162.87 radiation 20.0 270 > th dose independent rect. 6 1
246 163.52 wind 5.0 90 > th dose independent rect. 2 12
273 163.84 wind 3.0 90 > th dose dependent rect. 22 16
289 164.05 wind 7.0 14400 > th dose independent rect. 4 7
298 164.14 wind 5.0 90 > th dose independent rect. 7 7
311 164.25 wind 7.0 14400 < th dose independent rect. 4 7
325 164.41 wind 9.0 43200 > th dose dependent rect. 12 2
327 164.46 wind 5.0 10 > th dose independent rect. 23 2
337 164.54 wind 7.0 14400 > th dose independent rect. 24 11
343 164.57 wind 7.0 14400 < th dose independent sin 7 NA
344 164.57 wind 5.0 14400 > th dose dependent rect. 24 12
348 164.59 wind 5.0 10 > th dose dependent rect. 22 7
354 164.61 wind 7.0 14400 < th dose independent rect. 24 11
358 164.62 wind 7.0 14400 > th dose dependent rect. 6 4
359 164.63 wind 7.0 14400 > th dose independent sin 7 NA
363 164.65 wind 5.0 10 > th dose dependent rect. 23 3
371 164.67 wind 5.0 10 > th dose dependent rect. 23 1
379 164.71 wind 5.0 10 > th dose independent rect. 22 7
392 164.77 humidity 60.0 43200 < th dose independent rect. 10 2
399 164.79 wind 5.0 30 > th dose independent rect. 17 21
404 164.82 temperature 20.0 90 < th dose independent rect. 2 1
412 164.85 wind 7.0 14400 > th dose independent rect. 21 14
431 164.92 wind 5.0 14400 > th dose dependent sin 6 NA
437 164.94 wind 7.0 14400 < th dose independent rect. 21 14
471 165.02 radiation 40.0 90 > th dose dependent rect. 8 1
489 165.03 precipitation 0.1 1440 > th dose dependent rect. 17 1
494 165.05 wind 5.0 14400 > th dose independent rect. 23 16
502 165.09 precipitation 0.1 90 > th dose independent rect. 23 2
504 165.09 precipitation 0.1 90 > th dose dependent rect. 23 2
523 165.13 precipitation 0.1 720 > th dose independent rect. 22 1
524 165.13 humidity 60.0 43200 > th dose independent rect. 8 4
526 165.13 precipitation 0.1 720 > th dose dependent rect. 22 1
527 165.13 wind 9.0 43200 > th dose dependent rect. 13 4
551 165.19 wind 1.0 720 < th dose independent rect. 23 1
565 165.23 wind 5.0 14400 < th dose independent rect. 23 16
597 165.33 wind 9.0 43200 > th dose independent rect. 12 2
612 165.39 wind 3.0 90 > th dose dependent rect. 2 12
618 165.40 wind 5.0 14400 > th dose dependent rect. 23 16
637 165.45 humidity 60.0 43200 > th dose independent rect. 10 1
673 165.56 precipitation 0.1 1440 > th dose independent rect. 17 1
684 165.58 wind 9.0 43200 < th dose independent rect. 12 2
691 165.61 wind 9.0 43200 > th dose independent rect. 13 4
813 165.87 wind 3.0 90 > th dose dependent rect. 17 21
822 165.89 wind 1.0 720 < th dose dependent rect. 23 1
898 166.05 wind 9.0 43200 < th dose independent rect. 14 3
913 166.08 humidity 70.0 43200 < th dose dependent rect. 8 3
916 166.10 atmosphere 1005.0 720 < th dose independent rect. 22 1
917 166.10 wind 9.0 43200 < th dose independent rect. 12 5
920 166.11 wind 1.0 1440 > th dose independent rect. 20 1
943 166.17 wind 3.0 90 > th dose dependent rect. 8 6
987 166.26 wind 7.0 4320 > th dose independent rect. 17 1