Os03g0289100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : OSK3 (OSK5).
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Os03g0289100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : OSK3 (OSK5).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.72 | 0.314 | 11.1 | 0.741 | 0.543 | 1.18 | 0.34 | 3.62 | 0.461 | 9.8 | 1.059 | 1446 | -- | -- |
| 47.86 | 0.322 | 11 | 1.02 | 0.469 | 0.507 | 0.279 | -- | 0.55 | 9.57 | 23.93 | 2789 | -- | -- |
| 44.92 | 0.312 | 11.1 | 0.755 | 0.483 | 1.14 | -- | 3.47 | 0.458 | 9.5 | 1.107 | 1423 | -- | -- |
| 48.17 | 0.323 | 11 | 1.04 | 0.466 | 0.506 | -- | -- | 0.553 | 9.65 | 24.02 | 2789 | -- | -- |
| 51.85 | 0.335 | 11.1 | 0.578 | -- | 1.21 | -- | 3.76 | 0.442 | -- | 1.615 | 8284 | -- | -- |
| 54.39 | 0.346 | 11.1 | 1.02 | 0.531 | -- | 0.315 | -- | 0.457 | 9.93 | -- | -- | -- | -- |
| 54.78 | 0.347 | 11.1 | 1.03 | 0.53 | -- | -- | -- | 0.458 | 9.92 | -- | -- | -- | -- |
| 49.89 | 0.329 | 11 | 1.04 | -- | 0.923 | -- | -- | 0.625 | -- | 4.415 | 2587 | -- | -- |
| 71.66 | 0.394 | 11 | -- | 0.52 | 0.693 | -- | -- | 0.555 | 10.2 | 60 | 9086 | -- | -- |
| 71.6 | 0.395 | 11.1 | 1.02 | -- | -- | -- | -- | 0.458 | -- | -- | -- | -- | -- |
| 82.64 | 0.425 | 11.1 | -- | 0.526 | -- | -- | -- | 0.343 | 9.78 | -- | -- | -- | -- |
| 75.27 | 0.404 | 11.1 | -- | -- | 1.21 | -- | -- | 0.529 | -- | 10 | 4008 | -- | -- |
| 99.16 | 0.465 | 11.1 | -- | -- | -- | -- | -- | 0.345 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.17 | temperature | 25 | 14400 | > th | dose dependent | rect. | 20 | 14 |
| 2 | 41.18 | temperature | 25 | 14400 | > th | dose dependent | rect. | 23 | 11 |
| 4 | 41.19 | temperature | 25 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 42 | 41.31 | temperature | 25 | 14400 | > th | dose dependent | sin | 8 | NA |
| 53 | 41.36 | temperature | 25 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 81 | 41.48 | temperature | 25 | 14400 | > th | dose independent | rect. | 5 | 4 |
| 93 | 41.52 | temperature | 25 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 103 | 41.53 | temperature | 25 | 14400 | < th | dose independent | rect. | 3 | 6 |
| 104 | 41.53 | temperature | 25 | 14400 | > th | dose dependent | rect. | 20 | 5 |
| 114 | 41.55 | temperature | 30 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 121 | 41.56 | temperature | 25 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 134 | 41.58 | temperature | 25 | 14400 | > th | dose independent | rect. | 20 | 13 |
| 154 | 41.61 | temperature | 25 | 14400 | > th | dose independent | rect. | 23 | 11 |
| 191 | 41.65 | temperature | 30 | 14400 | > th | dose independent | rect. | 12 | 2 |
| 207 | 41.67 | temperature | 25 | 14400 | < th | dose independent | rect. | 21 | 12 |
| 261 | 41.71 | temperature | 25 | 14400 | > th | dose dependent | no | NA | NA |
| 268 | 41.71 | temperature | 25 | 14400 | > th | dose dependent | rect. | 6 | 19 |
| 294 | 41.72 | temperature | 25 | 14400 | > th | dose dependent | rect. | 1 | 23 |
| 298 | 41.73 | temperature | 25 | 14400 | > th | dose independent | sin | 9 | NA |
| 303 | 41.73 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 20 |
| 319 | 41.73 | temperature | 25 | 14400 | > th | dose dependent | rect. | 22 | 23 |
| 329 | 41.74 | temperature | 30 | 14400 | < th | dose independent | rect. | 2 | 12 |
| 404 | 41.77 | temperature | 30 | 14400 | > th | dose independent | rect. | 18 | 20 |
| 439 | 41.80 | temperature | 25 | 14400 | < th | dose independent | sin | 9 | NA |
| 526 | 41.84 | temperature | 25 | 14400 | > th | dose independent | rect. | 20 | 7 |
| 547 | 41.85 | temperature | 30 | 14400 | < th | dose independent | sin | 4 | NA |
| 681 | 41.91 | temperature | 30 | 14400 | > th | dose independent | sin | 4 | NA |
| 694 | 41.91 | temperature | 25 | 14400 | > th | dose dependent | rect. | 13 | 13 |
| 832 | 41.97 | temperature | 30 | 14400 | < th | dose independent | no | NA | NA |
| 942 | 41.98 | temperature | 25 | 14400 | < th | dose independent | rect. | 19 | 9 |
| 962 | 41.98 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 23 |