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Os03g0288400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.7 (0.0274) R2 : 0.682
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.41 (0.0856) R2dC : 0.267 R2C : 0.498
β3 : -1.13 (0.0873) R2dE : 0.169 R2E : 0.401
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.172 (0.0577) R2dN8 : 0.00909 R2N8 : 0.012
σ : 0.514
deviance : 121.6
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C
peak time of C : 18.1
E
wheather : radiation
threshold : 0.7001
memory length : 13
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 5.02
open length of G : 3.85

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
122.32 0.52 10.7 0.0943 1.43 -1.11 0.452 0.0722 -0.203 18.2 0.72 14 4.99 3.23
121.78 0.518 10.7 0.0866 1.41 -1.09 0.434 -- -0.212 18.2 0.72 14 4.99 3.23
121.42 0.513 10.7 0.0827 1.42 -1.11 -- -0.107 -0.184 18.1 0.7199 13 5.02 3.83
121.46 0.513 10.7 0.0932 1.42 -1.11 -- -- -0.183 18.1 0.7157 13 5.02 3.84
186.7 0.636 10.6 0.0884 -- -1.74 -- -0.411 -0.172 -- -0.8615 32 4.78 4
166.19 0.604 10.7 0.0389 2 -- 0.662 -- -0.236 18.3 -- -- -- --
167.26 0.606 10.7 0.0316 2.01 -- -- -- -0.234 18.3 -- -- -- --
152.23 0.575 10.7 0.0729 -- -1.89 -- -- -0.123 -- -15.31 210 2.32 5.5
121.6 0.514 10.7 -- 1.41 -1.13 -- -- -0.172 18.1 0.7001 13 5.02 3.85
376.11 0.906 10.7 -0.0228 -- -- -- -- -0.278 -- -- -- -- --
167.28 0.605 10.7 -- 2.01 -- -- -- -0.238 18.3 -- -- -- --
152.13 0.574 10.7 -- -- -1.94 -- -- -0.121 -- -15.34 211 2.3 5.57
376.12 0.905 10.7 -- -- -- -- -- -0.275 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 124.09 radiation 1.0 10 > th dose independent rect. 5 3
12 124.68 precipitation 0.1 10 < th dose independent rect. 5 3
13 124.68 precipitation 0.1 10 < th dose dependent rect. 5 3
25 124.84 wind 5.0 10 < th dose independent rect. 5 3
39 124.90 temperature 10.0 10 > th dose independent rect. 5 3
41 124.90 temperature 30.0 10 < th dose independent rect. 5 3
42 124.90 humidity 50.0 10 > th dose independent rect. 5 3
44 124.90 atmosphere 995.0 10 > th dose independent rect. 5 3
45 124.90 atmosphere 1015.0 10 < th dose independent rect. 5 3
46 124.90 temperature 10.0 10 > th dose independent rect. 8 21
47 124.92 wind 9.0 10 < th dose dependent rect. 5 4
50 125.10 wind 9.0 10 < th dose independent rect. 8 21
80 125.80 radiation 1.0 30 < th dose dependent sin 10 NA
82 125.83 wind 9.0 270 < th dose dependent rect. 4 2
83 125.87 radiation 40.0 10 < th dose independent rect. 5 3
85 125.95 wind 9.0 270 < th dose independent rect. 6 22
87 126.00 temperature 10.0 10 > th dose dependent rect. 8 21
88 126.15 wind 5.0 270 < th dose independent rect. 4 2
122 126.59 temperature 10.0 10 > th dose dependent rect. 5 3
135 126.84 precipitation 0.1 10 < th dose independent rect. 8 21
136 126.84 precipitation 0.1 10 < th dose dependent rect. 8 21
146 127.01 precipitation 0.1 270 < th dose independent rect. 4 2
147 127.01 precipitation 0.1 270 < th dose dependent rect. 4 2
152 127.25 atmosphere 995.0 10 > th dose dependent rect. 5 3
158 127.43 temperature 10.0 270 > th dose independent rect. 4 2
160 127.43 temperature 30.0 270 < th dose independent rect. 4 2
161 127.43 humidity 50.0 270 > th dose independent rect. 4 2
164 127.43 atmosphere 995.0 270 > th dose independent rect. 4 2
165 127.43 atmosphere 1015.0 270 < th dose independent rect. 4 2
166 127.43 radiation 20.0 270 < th dose independent rect. 4 2
169 127.43 temperature 10.0 270 > th dose independent rect. 6 22
181 127.71 atmosphere 1005.0 10 > th dose independent rect. 5 3
184 127.78 radiation 40.0 270 < th dose dependent rect. 4 2
186 127.81 radiation 1.0 10 < th dose independent sin 10 NA
197 127.99 radiation 20.0 270 < th dose dependent rect. 3 5
207 128.29 radiation 1.0 10 > th dose independent sin 10 NA
208 128.35 atmosphere 995.0 10 > th dose independent rect. 8 21
217 128.67 humidity 50.0 10 > th dose dependent rect. 5 4
243 128.90 radiation 40.0 30 < th dose dependent rect. 5 4
251 129.01 radiation 30.0 90 < th dose independent rect. 4 7
261 129.18 humidity 50.0 10 > th dose independent rect. 9 20
267 129.25 precipitation 0.1 270 < th dose independent rect. 6 21
268 129.25 precipitation 0.1 270 < th dose dependent rect. 6 21
289 129.49 atmosphere 1015.0 10 < th dose independent rect. 8 21
311 129.74 humidity 50.0 270 > th dose dependent rect. 4 2
350 130.15 atmosphere 1005.0 270 > th dose independent rect. 4 2
376 130.45 temperature 10.0 270 > th dose dependent rect. 4 2
377 130.48 atmosphere 995.0 270 > th dose dependent rect. 4 2
466 131.63 wind 1.0 90 > th dose independent rect. 8 21
524 132.38 temperature 30.0 90 < th dose dependent rect. 4 5
567 132.84 radiation 40.0 90 < th dose independent rect. 4 15
571 132.89 humidity 60.0 90 > th dose dependent rect. 4 7
585 133.07 temperature 30.0 270 < th dose dependent rect. 4 1
631 133.58 radiation 40.0 10 < th dose independent rect. 5 15
643 133.71 radiation 40.0 10 < th dose independent rect. 5 17
647 133.75 wind 9.0 90 < th dose dependent rect. 8 20
678 134.05 atmosphere 1015.0 10 < th dose dependent rect. 5 4
715 134.33 humidity 50.0 10 > th dose dependent rect. 20 9
718 134.39 temperature 30.0 90 < th dose independent rect. 4 15
729 134.49 radiation 40.0 90 < th dose independent rect. 4 17
731 134.55 wind 1.0 90 > th dose independent rect. 5 3
770 134.97 radiation 40.0 90 < th dose independent rect. 4 19
772 134.98 temperature 30.0 90 < th dose dependent rect. 4 7
776 134.99 humidity 50.0 90 > th dose dependent rect. 19 9
791 135.10 radiation 1.0 10 < th dose dependent rect. 20 10
813 135.20 wind 7.0 270 < th dose independent rect. 17 10
817 135.21 radiation 1.0 10 < th dose independent rect. 20 10
843 135.33 temperature 15.0 90 > th dose independent rect. 15 17
855 135.38 temperature 10.0 1440 > th dose independent rect. 5 5
858 135.38 atmosphere 995.0 1440 > th dose independent rect. 5 5
859 135.38 atmosphere 1015.0 1440 < th dose independent rect. 5 5
861 135.38 temperature 10.0 1440 > th dose independent rect. 10 19
866 135.39 temperature 10.0 90 > th dose dependent rect. 8 7
901 135.53 radiation 1.0 10 < th dose dependent rect. 20 20
940 135.66 wind 9.0 1440 < th dose independent rect. 5 4
944 135.66 humidity 50.0 1440 > th dose independent rect. 5 4
966 135.72 wind 9.0 10 < th dose dependent rect. 9 20
976 135.77 radiation 1.0 10 < th dose dependent rect. 20 18
981 135.81 atmosphere 995.0 270 > th dose independent rect. 6 21