Os03g0287100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Phosphatidylinositol transfer protein family protein.
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Os03g0287100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Phosphatidylinositol transfer protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 183.97 | 0.637 | 11.9 | -1.94 | 2.6 | -1.81 | 2.86 | -1.03 | -0.587 | 6.54 | 21.09 | 4211 | -- | -- |
| 185.48 | 0.634 | 11.8 | -1.74 | 2.59 | -1.66 | 2.84 | -- | -0.54 | 6.56 | 21.1 | 4209 | -- | -- |
| 204.06 | 0.665 | 11.9 | -1.85 | 2.61 | -1.83 | -- | -0.896 | -0.583 | 6.44 | 21.1 | 4209 | -- | -- |
| 205.2 | 0.667 | 11.8 | -1.66 | 2.61 | -1.7 | -- | -- | -0.536 | 6.44 | 21.09 | 4209 | -- | -- |
| 548.35 | 1.09 | 11.9 | -1.77 | -- | -1.77 | -- | -0.627 | -0.501 | -- | 21.1 | 3559 | -- | -- |
| 246.31 | 0.736 | 12 | -2.74 | 2.57 | -- | 2.98 | -- | -1.06 | 6.63 | -- | -- | -- | -- |
| 268.3 | 0.767 | 12 | -2.7 | 2.58 | -- | -- | -- | -1.07 | 6.52 | -- | -- | -- | -- |
| 550.03 | 1.09 | 11.9 | -1.65 | -- | -1.68 | -- | -- | -0.493 | -- | 21.1 | 3560 | -- | -- |
| 213.95 | 0.681 | 11.7 | -- | 2.59 | -2.43 | -- | -- | -0.133 | 6.45 | 19.1 | 47520 | -- | -- |
| 614.8 | 1.16 | 12 | -2.64 | -- | -- | -- | -- | -1.02 | -- | -- | -- | -- | -- |
| 460.6 | 1 | 11.9 | -- | 2.55 | -- | -- | -- | -0.77 | 6.58 | -- | -- | -- | -- |
| 562.42 | 1.1 | 11.8 | -- | -- | -2.37 | -- | -- | -0.101 | -- | 19 | 47520 | -- | -- |
| 798.25 | 1.32 | 11.9 | -- | -- | -- | -- | -- | -0.725 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 176.38 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 8 |
| 2 | 176.40 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 3 | 176.40 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 8 |
| 4 | 176.45 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 39 | 178.57 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 7 |
| 52 | 178.98 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 54 | 179.06 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 63 | 179.32 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 4 |
| 76 | 179.53 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 7 |
| 77 | 179.55 | temperature | 20 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 87 | 179.77 | humidity | 60 | 43200 | < th | dose independent | rect. | 20 | 13 |
| 92 | 179.95 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 3 |
| 95 | 180.01 | humidity | 70 | 43200 | < th | dose dependent | rect. | 21 | 11 |
| 102 | 180.09 | temperature | 20 | 4320 | < th | dose independent | rect. | 23 | 1 |
| 121 | 180.44 | humidity | 60 | 43200 | > th | dose independent | rect. | 20 | 13 |
| 192 | 181.69 | humidity | 70 | 43200 | < th | dose independent | rect. | 22 | 10 |
| 199 | 181.79 | humidity | 70 | 43200 | > th | dose independent | rect. | 22 | 10 |
| 272 | 182.99 | temperature | 20 | 4320 | > th | dose independent | sin | 12 | NA |
| 295 | 183.28 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 305 | 183.43 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |
| 322 | 183.66 | temperature | 20 | 4320 | < th | dose independent | sin | 12 | NA |
| 349 | 184.00 | radiation | 40 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 351 | 184.02 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 4 |
| 366 | 184.18 | temperature | 25 | 1440 | < th | dose dependent | rect. | 6 | 2 |
| 372 | 184.22 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 7 |
| 379 | 184.28 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 2 |
| 384 | 184.31 | radiation | 40 | 4320 | < th | dose dependent | rect. | 17 | 7 |
| 439 | 184.81 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 2 |
| 453 | 184.90 | radiation | 20 | 4320 | < th | dose dependent | rect. | 17 | 9 |
| 460 | 184.94 | radiation | 20 | 4320 | < th | dose dependent | rect. | 17 | 11 |
| 514 | 185.42 | radiation | 1 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 570 | 185.72 | humidity | 60 | 43200 | < th | dose dependent | rect. | 5 | 4 |
| 772 | 186.72 | humidity | 70 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 879 | 187.24 | humidity | 60 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 958 | 187.55 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 21 |
| 981 | 187.67 | temperature | 15 | 1440 | > th | dose dependent | rect. | 5 | 1 |