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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0285100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.14 (0.0377) R2 : 0.797
β1 : -- (--) R2dD : -- R2D : --
β2 : 3.78 (0.0927) R2dC : 0.744 R2C : 0.672
β3 : 2.23 (0.155) R2dE : 0.104 R2E : 0.0529
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.248 (0.0829) R2dN8 : 0.00581 R2N8 : 0.0138
σ : 0.695
deviance : 222.66
__
_____
C
peak time of C : 9.08
E
wheather : temperature
threshold : 27.7
memory length : 60
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
206.48 0.675 6.19 -0.451 3.76 2.41 1.22 3.13 -0.344 9.02 26.32 73 -- --
221.95 0.699 6.13 0.042 3.84 2.18 0.626 -- -0.25 9.07 27.71 57 -- --
211.26 0.677 6.19 -0.387 3.72 2.38 -- 2.94 -0.339 9.02 26.56 78 -- --
222.49 0.695 6.13 0.0771 3.78 2.26 -- -- -0.227 9.05 27.62 59 -- --
725.45 1.25 6.23 0.247 -- 4.46 -- 2.49 -0.117 -- 222.7 612 -- --
290.12 0.799 6.24 -0.48 3.71 -- 0.793 -- -0.72 8.4 -- -- -- --
292.1 0.8 6.24 -0.456 3.71 -- -- -- -0.721 8.4 -- -- -- --
733.6 1.26 6.19 0.649 -- 4.59 -- -- -0.00448 -- 227.6 610 -- --
222.66 0.695 6.14 -- 3.78 2.23 -- -- -0.248 9.08 27.7 60 -- --
1059.32 1.52 6.34 -0.436 -- -- -- -- -0.683 -- -- -- -- --
297.59 0.807 6.23 -- 3.71 -- -- -- -0.67 8.41 -- -- -- --
743.68 1.27 6.21 -- -- 4.35 -- -- -0.106 -- 42.71 603 -- --
1064.33 1.52 6.33 -- -- -- -- -- -0.634 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 199.49 temperature 30 30 < th dose dependent rect. 3 23
3 202.83 temperature 30 90 < th dose dependent rect. 12 19
6 203.71 temperature 30 90 < th dose dependent rect. 11 22
8 205.09 temperature 30 10 < th dose dependent rect. 12 20
11 206.19 temperature 30 90 < th dose dependent sin 9 NA
12 206.29 temperature 15 30 > th dose dependent rect. 7 21
28 207.91 temperature 10 90 > th dose dependent sin 9 NA
32 208.35 temperature 30 90 < th dose dependent rect. 15 16
41 209.20 temperature 30 30 < th dose dependent rect. 21 23
47 210.05 temperature 30 90 < th dose dependent rect. 17 14
51 210.45 temperature 25 90 < th dose dependent rect. 19 23
54 210.64 temperature 30 90 < th dose dependent rect. 9 23
65 211.19 temperature 25 90 < th dose dependent rect. 7 23
66 211.26 temperature 25 90 < th dose dependent no NA NA
70 211.55 temperature 25 90 < th dose dependent rect. 1 23
85 211.99 temperature 30 10 < th dose dependent rect. 10 22
86 212.00 temperature 30 10 < th dose dependent rect. 13 23
87 212.05 temperature 25 90 < th dose dependent rect. 15 23
93 212.30 temperature 25 90 < th dose dependent rect. 17 23
106 212.54 temperature 25 30 < th dose dependent rect. 23 23
249 215.34 temperature 25 30 < th dose dependent rect. 5 23
324 217.20 temperature 20 90 > th dose independent rect. 7 21
340 217.44 temperature 30 90 < th dose dependent rect. 21 10
382 218.38 temperature 20 270 > th dose dependent rect. 17 17
386 218.50 temperature 15 270 > th dose dependent rect. 15 22
419 219.02 temperature 25 90 < th dose dependent rect. 23 20
443 219.52 temperature 30 90 < th dose dependent rect. 21 12
510 220.37 temperature 20 90 > th dose independent rect. 18 10
592 221.48 temperature 15 10 > th dose dependent rect. 15 23
603 221.65 temperature 10 10 > th dose dependent no NA NA
632 222.11 temperature 10 270 > th dose dependent rect. 16 10
643 222.36 temperature 25 270 < th dose independent rect. 10 21
690 222.89 temperature 25 90 < th dose dependent rect. 19 16
706 223.05 temperature 15 270 > th dose dependent rect. 21 13
842 224.97 temperature 15 90 > th dose dependent rect. 13 23
917 225.77 temperature 20 10 > th dose dependent rect. 19 17
997 226.60 temperature 25 720 < th dose dependent rect. 7 17