Os03g0284900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os03g0284900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.01 | 0.266 | 12 | -0.201 | 1.21 | 0.886 | -0.608 | -0.179 | -0.228 | 17.9 | 25.37 | 10 | -- | -- |
| 32.04 | 0.264 | 12 | -0.228 | 1.2 | 0.899 | -0.587 | -- | -0.234 | 17.9 | 25.32 | 5 | -- | -- |
| 32.9 | 0.267 | 12 | -0.205 | 1.21 | 0.897 | -- | -0.0812 | -0.228 | 17.9 | 25.4 | 8 | -- | -- |
| 32.88 | 0.267 | 12 | -0.224 | 1.2 | 0.901 | -- | -- | -0.237 | 17.9 | 25.32 | 4 | -- | -- |
| 103.09 | 0.475 | 12 | -0.29 | -- | 0.832 | -- | -0.0412 | -0.332 | -- | 23.2 | 2 | -- | -- |
| 44.17 | 0.312 | 12 | -0.442 | 1.15 | -- | -0.585 | -- | -0.419 | 18.5 | -- | -- | -- | -- |
| 45.02 | 0.314 | 12 | -0.434 | 1.14 | -- | -- | -- | -0.421 | 18.5 | -- | -- | -- | -- |
| 103.09 | 0.475 | 12 | -0.294 | -- | 0.837 | -- | -- | -0.333 | -- | 23.2 | 2 | -- | -- |
| 34.08 | 0.272 | 12 | -- | 1.21 | 0.985 | -- | -- | -0.198 | 17.9 | 25.3 | 4 | -- | -- |
| 113 | 0.497 | 12 | -0.462 | -- | -- | -- | -- | -0.444 | -- | -- | -- | -- | -- |
| 49.99 | 0.331 | 12 | -- | 1.15 | -- | -- | -- | -0.372 | 18.5 | -- | -- | -- | -- |
| 105.22 | 0.479 | 12 | -- | -- | 0.939 | -- | -- | -0.289 | -- | 23.2 | 2 | -- | -- |
| 118.65 | 0.508 | 12 | -- | -- | -- | -- | -- | -0.393 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.37 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 14 |
| 5 | 25.76 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 16 |
| 31 | 27.91 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 8 |
| 42 | 28.24 | temperature | 15 | 10 | > th | dose dependent | sin | 10 | NA |
| 44 | 28.26 | temperature | 15 | 10 | > th | dose dependent | rect. | 17 | 15 |
| 91 | 29.38 | temperature | 20 | 90 | > th | dose independent | rect. | 4 | 19 |
| 102 | 29.53 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 10 |
| 111 | 29.61 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 6 |
| 112 | 29.63 | temperature | 30 | 10 | < th | dose dependent | sin | 10 | NA |
| 151 | 30.00 | temperature | 20 | 270 | > th | dose independent | rect. | 2 | 19 |
| 252 | 30.90 | temperature | 20 | 270 | > th | dose independent | rect. | 2 | 6 |
| 257 | 30.96 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 2 |
| 264 | 31.01 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 13 |
| 276 | 31.05 | temperature | 10 | 90 | > th | dose dependent | rect. | 4 | 19 |
| 304 | 31.23 | temperature | 30 | 10 | < th | dose dependent | rect. | 18 | 11 |
| 306 | 31.25 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 4 |
| 325 | 31.41 | temperature | 25 | 10 | < th | dose dependent | rect. | 8 | 22 |
| 334 | 31.46 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 15 |
| 345 | 31.50 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 18 |
| 346 | 31.51 | temperature | 10 | 10 | > th | dose dependent | rect. | 5 | 18 |
| 348 | 31.52 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 13 |
| 367 | 31.61 | temperature | 25 | 90 | < th | dose dependent | rect. | 8 | 21 |
| 380 | 31.66 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 17 |
| 454 | 31.87 | temperature | 15 | 270 | > th | dose dependent | rect. | 2 | 6 |
| 462 | 31.89 | temperature | 25 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 479 | 31.95 | temperature | 20 | 30 | > th | dose independent | sin | 9 | NA |
| 535 | 32.05 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 541 | 32.06 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 542 | 32.06 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 545 | 32.07 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 20 |
| 549 | 32.08 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 555 | 32.10 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 572 | 32.14 | temperature | 25 | 720 | < th | dose dependent | sin | 16 | NA |
| 697 | 32.37 | temperature | 25 | 10 | < th | dose dependent | rect. | 18 | 16 |
| 727 | 32.40 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 771 | 32.44 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 840 | 32.55 | temperature | 10 | 270 | > th | dose dependent | rect. | 13 | 9 |
| 912 | 32.61 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 16 |
| 915 | 32.61 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 18 |