Os03g0283900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Serine/threonine-protein kinase PBS1 (EC 2.7.1.37) (AvrPphB susceptible protein 1).
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Os03g0283900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Serine/threonine-protein kinase PBS1 (EC 2.7.1.37) (AvrPphB susceptible protein 1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.13 | 0.329 | 7.15 | 1.32 | 0.432 | 1.1 | -0.524 | 2.55 | 0.0686 | 23.4 | 0.5822 | 1436 | -- | -- |
| 51.59 | 0.335 | 7.11 | 1.56 | 0.332 | 0.528 | -0.521 | -- | 0.0996 | 23.5 | 1.672 | 1496 | -- | -- |
| 49.5 | 0.328 | 7.14 | 1.34 | 0.578 | 1.13 | -- | 2.68 | 0.0727 | 23.5 | 0.5788 | 1384 | -- | -- |
| 52.85 | 0.339 | 7.1 | 1.57 | 0.337 | 0.59 | -- | -- | 0.112 | 23.2 | 1.687 | 1496 | -- | -- |
| 55.38 | 0.349 | 7.11 | 1.49 | -- | 0.298 | -- | -0.576 | 0.0493 | -- | 0.5788 | 1384 | -- | -- |
| 54.62 | 0.346 | 7.12 | 1.44 | 0.412 | -- | -0.618 | -- | 0.037 | 23.3 | -- | -- | -- | -- |
| 56.26 | 0.351 | 7.12 | 1.46 | 0.415 | -- | -- | -- | 0.039 | 23.4 | -- | -- | -- | -- |
| 55.71 | 0.348 | 7.08 | 1.59 | -- | 0.891 | -- | -- | 0.14 | -- | 1.968 | 1610 | -- | -- |
| 105.62 | 0.479 | 7.16 | -- | 0.456 | 0.441 | -- | -- | -0.065 | 23.6 | 9.996 | 9857 | -- | -- |
| 67.03 | 0.383 | 7.11 | 1.47 | -- | -- | -- | -- | 0.0432 | -- | -- | -- | -- | -- |
| 112.58 | 0.496 | 7.16 | -- | 0.43 | -- | -- | -- | -0.124 | 23.6 | -- | -- | -- | -- |
| 114.45 | 0.5 | 7.15 | -- | -- | 0.318 | -- | -- | -0.118 | -- | 10 | 1674 | -- | -- |
| 124.23 | 0.52 | 7.15 | -- | -- | -- | -- | -- | -0.12 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.86 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 2 | 46.94 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 3 | 46.94 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 5 |
| 4 | 46.96 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 2 |
| 7 | 47.04 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 19 | 15 |
| 17 | 47.12 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 19 | 13 |
| 18 | 47.13 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 33 | 47.14 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 24 | 21 |
| 39 | 47.15 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 20 | 21 |
| 41 | 47.16 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 42 | 47.16 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 10 | NA |
| 86 | 47.20 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 20 | 8 |
| 95 | 47.22 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 131 | 47.24 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 23 |
| 140 | 47.26 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 160 | 47.27 | humidity | 90.0 | 14400 | > th | dose dependent | no | NA | NA |
| 165 | 47.27 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 23 |
| 180 | 47.30 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 3 | NA |
| 182 | 47.30 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 18 | 3 |
| 195 | 47.32 | humidity | 90.0 | 14400 | > th | dose independent | sin | 10 | NA |
| 207 | 47.33 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 216 | 47.34 | humidity | 70.0 | 14400 | < th | dose independent | sin | 13 | NA |
| 225 | 47.35 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 237 | 47.36 | humidity | 70.0 | 14400 | > th | dose independent | sin | 13 | NA |
| 238 | 47.36 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 19 | 9 |
| 255 | 47.37 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 1 | 9 |
| 268 | 47.38 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 3 | 7 |
| 300 | 47.41 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 1 | 9 |
| 308 | 47.42 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 15 | 7 |
| 329 | 47.43 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 14 | 18 |
| 353 | 47.45 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 370 | 47.45 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 11 |
| 381 | 47.46 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 1 | 3 |
| 415 | 47.48 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 14 | 8 |
| 488 | 47.52 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 3 | 5 |
| 490 | 47.52 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 20 | 6 |
| 496 | 47.52 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 22 | 23 |
| 498 | 47.52 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 3 | 5 |
| 506 | 47.53 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 524 | 47.53 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 1 | 7 |
| 536 | 47.54 | radiation | 40.0 | 4320 | > th | dose dependent | rect. | 14 | 18 |
| 554 | 47.56 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 11 | 21 |
| 569 | 47.57 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 11 | 11 |
| 594 | 47.57 | radiation | 40.0 | 4320 | > th | dose dependent | rect. | 14 | 2 |
| 699 | 47.61 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 719 | 47.62 | humidity | 90.0 | 14400 | > th | dose independent | no | NA | NA |
| 735 | 47.63 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 745 | 47.63 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 5 | 23 |
| 778 | 47.64 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 786 | 47.65 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 813 | 47.67 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 823 | 47.67 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 3 | 23 |
| 894 | 47.73 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 1 | 23 |
| 926 | 47.75 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 22 | 2 |
| 996 | 47.78 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 19 | 14 |