Os03g0283600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase family protein.
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Os03g0283600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.91 | 0.351 | 11.5 | -0.192 | 1.21 | -0.982 | 0.641 | 0.3 | -0.306 | 12.1 | 0.7818 | 52 | -- | -- |
| 55.94 | 0.348 | 11.5 | -0.169 | 1.21 | -0.988 | 0.312 | -- | -0.304 | 12.1 | 0.85 | 54 | -- | -- |
| 56.19 | 0.349 | 11.5 | -0.143 | 1.23 | -0.968 | -- | -0.153 | -0.309 | 12 | 0.79 | 58 | -- | -- |
| 56.36 | 0.35 | 11.5 | -0.164 | 1.21 | -0.987 | -- | -- | -0.305 | 12.1 | 0.85 | 54 | -- | -- |
| 75.57 | 0.405 | 11.5 | -0.242 | -- | -1.74 | -- | -0.623 | -0.352 | -- | 0.94 | 51 | -- | -- |
| 74.87 | 0.406 | 11.4 | -0.13 | 2.37 | -- | 0.338 | -- | -0.268 | 12.1 | -- | -- | -- | -- |
| 75.37 | 0.407 | 11.4 | -0.117 | 2.37 | -- | -- | -- | -0.267 | 12.1 | -- | -- | -- | -- |
| 72.55 | 0.397 | 11.5 | -0.181 | -- | -1.83 | -- | -- | -0.353 | -- | 0.9 | 54 | -- | -- |
| 57.02 | 0.352 | 11.5 | -- | 1.19 | -0.999 | -- | -- | -0.296 | 12.1 | 0.8502 | 54 | -- | -- |
| 427.8 | 0.966 | 11.5 | -0.192 | -- | -- | -- | -- | -0.301 | -- | -- | -- | -- | -- |
| 75.73 | 0.407 | 11.4 | -- | 2.37 | -- | -- | -- | -0.254 | 12.1 | -- | -- | -- | -- |
| 73.54 | 0.399 | 11.5 | -- | -- | -1.83 | -- | -- | -0.342 | -- | 0.93 | 54 | -- | -- |
| 428.77 | 0.967 | 11.5 | -- | -- | -- | -- | -- | -0.279 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.24 | radiation | 1.0 | 90 | < th | dose dependent | sin | 9 | NA |
| 2 | 43.25 | radiation | 1.0 | 90 | < th | dose independent | sin | 9 | NA |
| 7 | 44.79 | radiation | 1.0 | 90 | > th | dose independent | sin | 9 | NA |
| 26 | 47.09 | radiation | 1.0 | 90 | > th | dose independent | rect. | 5 | 4 |
| 55 | 48.58 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 20 | 23 |
| 60 | 48.79 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 3 |
| 83 | 49.58 | radiation | 1.0 | 90 | < th | dose independent | rect. | 20 | 23 |
| 84 | 49.68 | radiation | 1.0 | 30 | > th | dose independent | rect. | 17 | 17 |
| 95 | 50.34 | temperature | 15.0 | 270 | > th | dose independent | rect. | 7 | 21 |
| 96 | 50.35 | temperature | 20.0 | 90 | > th | dose independent | rect. | 5 | 4 |
| 98 | 50.42 | temperature | 15.0 | 90 | > th | dose independent | rect. | 9 | 20 |
| 111 | 50.45 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 3 |
| 112 | 50.45 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 3 |
| 115 | 50.52 | wind | 9.0 | 270 | < th | dose dependent | rect. | 4 | 3 |
| 119 | 50.67 | wind | 5.0 | 270 | < th | dose independent | rect. | 4 | 3 |
| 124 | 50.77 | radiation | 20.0 | 270 | < th | dose independent | rect. | 4 | 3 |
| 126 | 50.78 | radiation | 1.0 | 270 | > th | dose independent | rect. | 5 | 2 |
| 128 | 50.78 | temperature | 10.0 | 270 | > th | dose independent | rect. | 4 | 3 |
| 130 | 50.78 | temperature | 30.0 | 270 | < th | dose independent | rect. | 4 | 3 |
| 131 | 50.78 | humidity | 50.0 | 270 | > th | dose independent | rect. | 4 | 3 |
| 133 | 50.78 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 4 | 3 |
| 134 | 50.78 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 4 | 3 |
| 162 | 50.83 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 9 | 20 |
| 168 | 50.94 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 5 | 5 |
| 174 | 51.06 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 21 |
| 182 | 51.08 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 9 | 20 |
| 186 | 51.12 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 21 |
| 215 | 51.35 | wind | 9.0 | 90 | < th | dose independent | rect. | 9 | 20 |
| 217 | 51.38 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 10 |
| 219 | 51.38 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 10 |
| 267 | 51.70 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 4 | 3 |
| 284 | 51.86 | temperature | 15.0 | 10 | > th | dose independent | rect. | 10 | 19 |
| 285 | 51.89 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 4 | 3 |
| 320 | 52.18 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 21 |
| 329 | 52.35 | temperature | 30.0 | 90 | < th | dose independent | rect. | 11 | 18 |
| 337 | 52.42 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 23 | 17 |
| 338 | 52.44 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 23 | 14 |
| 342 | 52.51 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 20 |
| 343 | 52.51 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 20 |
| 349 | 52.55 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 1 | 15 |
| 351 | 52.56 | radiation | 1.0 | 30 | < th | dose independent | rect. | 1 | 15 |
| 352 | 52.57 | radiation | 40.0 | 90 | < th | dose independent | rect. | 5 | 6 |
| 374 | 52.79 | temperature | 10.0 | 270 | > th | dose independent | rect. | 13 | 10 |
| 375 | 52.79 | temperature | 10.0 | 270 | > th | dose independent | rect. | 23 | 14 |
| 376 | 52.79 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 23 | 14 |
| 383 | 52.85 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 6 |
| 388 | 52.85 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 6 |
| 404 | 52.89 | wind | 9.0 | 270 | < th | dose independent | rect. | 23 | 14 |
| 437 | 53.11 | radiation | 1.0 | 30 | < th | dose independent | rect. | 1 | 13 |
| 439 | 53.13 | radiation | 40.0 | 270 | < th | dose independent | rect. | 3 | 6 |
| 448 | 53.19 | wind | 9.0 | 270 | < th | dose independent | rect. | 13 | 10 |
| 449 | 53.19 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 1 | 13 |
| 471 | 53.27 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 10 | 19 |
| 472 | 53.27 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 11 | 18 |
| 483 | 53.33 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 10 | 19 |
| 488 | 53.36 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 22 |
| 489 | 53.36 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 22 |
| 510 | 53.42 | temperature | 15.0 | 270 | > th | dose independent | rect. | 23 | 4 |
| 511 | 53.42 | humidity | 50.0 | 270 | > th | dose independent | rect. | 8 | 20 |
| 526 | 53.48 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 1 | 11 |
| 531 | 53.50 | radiation | 1.0 | 30 | < th | dose independent | rect. | 24 | 8 |
| 544 | 53.53 | wind | 7.0 | 270 | < th | dose independent | rect. | 3 | 6 |
| 555 | 53.59 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 23 | 4 |
| 558 | 53.60 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 1 | 7 |
| 580 | 53.66 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 6 |
| 582 | 53.66 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 6 |
| 583 | 53.66 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 6 |
| 584 | 53.66 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 6 |
| 587 | 53.69 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 23 | 6 |
| 595 | 53.72 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 5 | 5 |
| 600 | 53.72 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 5 | 5 |
| 602 | 53.73 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 6 |
| 613 | 53.80 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 1 | 5 |
| 629 | 53.86 | wind | 9.0 | 10 | < th | dose independent | rect. | 5 | 5 |
| 630 | 53.86 | temperature | 10.0 | 10 | > th | dose independent | rect. | 5 | 5 |
| 632 | 53.86 | humidity | 50.0 | 10 | > th | dose independent | rect. | 5 | 5 |
| 633 | 53.86 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 5 | 5 |
| 634 | 53.86 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 5 | 5 |
| 652 | 53.94 | temperature | 15.0 | 90 | > th | dose independent | rect. | 23 | 6 |
| 668 | 54.04 | wind | 9.0 | 10 | < th | dose independent | rect. | 10 | 19 |
| 680 | 54.10 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 5 | 4 |
| 726 | 54.35 | temperature | 30.0 | 270 | < th | dose independent | rect. | 23 | 4 |
| 727 | 54.35 | humidity | 50.0 | 270 | > th | dose independent | rect. | 23 | 4 |
| 730 | 54.35 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 23 | 4 |
| 731 | 54.35 | radiation | 1.0 | 270 | < th | dose independent | rect. | 23 | 4 |
| 737 | 54.35 | humidity | 50.0 | 270 | > th | dose independent | rect. | 23 | 14 |
| 738 | 54.35 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 20 |
| 739 | 54.35 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 23 | 4 |
| 745 | 54.36 | wind | 9.0 | 270 | < th | dose independent | rect. | 23 | 4 |
| 750 | 54.37 | temperature | 15.0 | 270 | > th | dose independent | rect. | 21 | 7 |
| 762 | 54.41 | radiation | 1.0 | 30 | > th | dose independent | rect. | 17 | 23 |
| 771 | 54.44 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 23 | 4 |
| 772 | 54.44 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 23 | 4 |
| 773 | 54.44 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 23 | 4 |
| 784 | 54.47 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 5 | 18 |
| 787 | 54.47 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 814 | 54.52 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 23 | 14 |
| 819 | 54.52 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 23 | 14 |
| 820 | 54.53 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 21 |
| 822 | 54.53 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 21 |
| 837 | 54.63 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 23 | 4 |
| 839 | 54.64 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 23 | 6 |
| 867 | 54.75 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 9 | 20 |
| 868 | 54.75 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 9 | 20 |
| 896 | 54.84 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 20 |
| 901 | 54.86 | wind | 1.0 | 270 | > th | dose independent | rect. | 13 | 10 |
| 923 | 55.04 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 24 | 5 |
| 928 | 55.08 | wind | 1.0 | 90 | > th | dose independent | rect. | 5 | 4 |
| 987 | 55.39 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 24 | 2 |
| 991 | 55.40 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 992 | 55.41 | wind | 1.0 | 270 | > th | dose independent | rect. | 5 | 2 |
| 993 | 55.42 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 7 |