Os03g0283500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os03g0283500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 241.46 | 0.73 | 4.99 | 1.38 | 2.56 | 1.79 | 1.78 | 0.145 | 0.613 | 19.9 | 23.67 | 295 | -- | -- |
| 241.44 | 0.724 | 5 | 1.35 | 2.54 | 1.81 | 1.77 | -- | 0.609 | 19.9 | 23.73 | 306 | -- | -- |
| 249.33 | 0.735 | 4.97 | 1.54 | 2.54 | 1.71 | -- | 1.49 | 0.677 | 19.7 | 23.72 | 331 | -- | -- |
| 250.21 | 0.737 | 4.99 | 1.32 | 2.51 | 1.86 | -- | -- | 0.617 | 19.8 | 23.9 | 327 | -- | -- |
| 477.09 | 1.02 | 4.93 | 1.27 | -- | 3.51 | -- | 1.23 | 0.432 | -- | 24.3 | 508 | -- | -- |
| 297.17 | 0.808 | 4.96 | 1.7 | 3.23 | -- | 2.25 | -- | 0.834 | 19.2 | -- | -- | -- | -- |
| 310.48 | 0.825 | 4.96 | 1.66 | 3.24 | -- | -- | -- | 0.84 | 19.2 | -- | -- | -- | -- |
| 472.13 | 1.01 | 4.97 | 0.933 | -- | 3.69 | -- | -- | 0.426 | -- | 24.31 | 493 | -- | -- |
| 291.86 | 0.796 | 5.03 | -- | 2.47 | 2.18 | -- | -- | 0.392 | 19.9 | 22.43 | 317 | -- | -- |
| 864.5 | 1.37 | 4.88 | 1.6 | -- | -- | -- | -- | 0.783 | -- | -- | -- | -- | -- |
| 383.08 | 0.916 | 5 | -- | 3.22 | -- | -- | -- | 0.655 | 19.2 | -- | -- | -- | -- |
| 494.26 | 1.04 | 4.99 | -- | -- | 3.84 | -- | -- | 0.306 | -- | 24.27 | 499 | -- | -- |
| 931.97 | 1.42 | 4.92 | -- | -- | -- | -- | -- | 0.606 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 228.94 | temperature | 30 | 270 | < th | dose dependent | sin | 22 | NA |
| 2 | 228.95 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 15 |
| 5 | 230.39 | temperature | 20 | 270 | > th | dose dependent | rect. | 10 | 11 |
| 6 | 230.72 | temperature | 10 | 270 | > th | dose dependent | rect. | 9 | 22 |
| 13 | 231.95 | temperature | 20 | 90 | > th | dose dependent | sin | 19 | NA |
| 23 | 232.72 | temperature | 20 | 270 | > th | dose dependent | rect. | 10 | 19 |
| 30 | 232.92 | temperature | 10 | 90 | > th | dose dependent | sin | 19 | NA |
| 36 | 233.44 | temperature | 20 | 90 | > th | dose dependent | rect. | 12 | 18 |
| 38 | 233.51 | temperature | 10 | 10 | > th | dose dependent | sin | 18 | NA |
| 51 | 233.95 | temperature | 20 | 270 | > th | dose dependent | sin | 22 | NA |
| 86 | 235.12 | temperature | 20 | 10 | > th | dose dependent | rect. | 12 | 19 |
| 90 | 235.23 | temperature | 20 | 10 | > th | dose dependent | rect. | 12 | 12 |
| 100 | 235.51 | temperature | 25 | 270 | > th | dose independent | rect. | 10 | 9 |
| 107 | 235.69 | temperature | 20 | 10 | > th | dose dependent | rect. | 12 | 17 |
| 306 | 239.79 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 15 |
| 364 | 240.72 | temperature | 25 | 10 | > th | dose independent | rect. | 12 | 8 |
| 377 | 240.85 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 8 |
| 488 | 241.99 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 549 | 242.57 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 22 |
| 564 | 242.78 | temperature | 25 | 270 | > th | dose dependent | rect. | 1 | 19 |
| 745 | 243.95 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 747 | 243.95 | temperature | 25 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 812 | 244.41 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 22 |
| 910 | 245.43 | temperature | 25 | 720 | > th | dose dependent | rect. | 11 | 2 |
| 914 | 245.47 | temperature | 30 | 270 | < th | dose independent | rect. | 4 | 21 |
| 919 | 245.51 | temperature | 10 | 270 | > th | dose dependent | rect. | 20 | 23 |
| 947 | 245.81 | temperature | 25 | 270 | < th | dose independent | sin | 22 | NA |