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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0281300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : phosphotransferase system, PEP-utilising enzyme, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.48 (0.0368) R2 : 0.652
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.752 (0.0891) R2dC : 0.0531 R2C : 0.025
β3 : -3.65 (0.134) R2dE : 0.681 R2E : 0.585
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.276 (0.0829) R2dN8 : 0.0131 R2N8 : -0.0557
σ : 0.677
deviance : 211.28
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_____
C
peak time of C : 2.6
E
wheather : temperature
threshold : 7.873
memory length : 10385
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
196.36 0.658 4.4 0.464 0.775 -2.99 0.201 4.92 0.115 2.17 14.7 5254 -- --
211.1 0.677 4.52 -0.234 0.739 -3.43 0.523 -- 0.182 2.08 12.3 10434 -- --
196.5 0.653 4.4 0.473 0.774 -2.98 -- 4.97 0.119 2.22 14.77 5254 -- --
210.68 0.676 4.5 -0.179 0.738 -3.54 -- -- 0.237 2.65 8.13 10356 -- --
222.27 0.694 4.29 0.81 -- -2.95 -- 4.89 0.494 -- -7.971 10415 -- --
417.28 0.958 4.75 -2.29 0.633 -- 0.194 -- -0.889 2.66 -- -- -- --
417.4 0.957 4.75 -2.29 0.635 -- -- -- -0.89 2.73 -- -- -- --
241.12 0.723 4.47 0.0361 -- -3.49 -- -- 0.342 -- 3.435 11856 -- --
211.28 0.677 4.48 -- 0.752 -3.65 -- -- 0.276 2.6 7.873 10385 -- --
440.82 0.981 4.75 -2.27 -- -- -- -- -0.874 -- -- -- -- --
556.11 1.1 4.69 -- 0.59 -- -- -- -0.634 2.69 -- -- -- --
241.14 0.723 4.47 -- -- -3.47 -- -- 0.332 -- 7.699 11855 -- --
576.38 1.12 4.69 -- -- -- -- -- -0.622 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 191.77 temperature 10 14400 > th dose dependent rect. 15 15
4 191.81 temperature 10 14400 > th dose dependent rect. 19 7
5 191.81 temperature 10 14400 > th dose dependent rect. 18 9
7 191.82 temperature 30 14400 < th dose dependent rect. 19 7
14 191.85 temperature 10 14400 > th dose dependent sin 13 NA
23 191.89 temperature 10 14400 > th dose dependent rect. 21 1
31 191.93 temperature 30 14400 < th dose dependent rect. 21 1
65 192.10 temperature 30 14400 < th dose dependent sin 13 NA
251 192.90 temperature 10 14400 > th dose dependent rect. 19 22
285 193.00 temperature 10 14400 > th dose dependent no NA NA
310 193.08 temperature 10 14400 > th dose dependent rect. 24 23
320 193.10 temperature 10 14400 > th dose dependent rect. 5 23
356 193.22 temperature 10 4320 > th dose dependent rect. 11 2
485 193.64 temperature 10 4320 > th dose dependent rect. 10 4
509 193.69 temperature 30 14400 < th dose dependent no NA NA
514 193.70 temperature 15 4320 > th dose dependent rect. 7 8
536 193.74 temperature 30 14400 < th dose dependent rect. 21 23
538 193.75 temperature 30 4320 < th dose dependent rect. 7 7
567 193.80 temperature 30 14400 < th dose dependent rect. 24 23
574 193.82 temperature 30 14400 < th dose dependent rect. 5 23
609 193.90 temperature 30 14400 < th dose dependent rect. 5 2
629 193.94 temperature 10 14400 > th dose dependent rect. 5 2
707 194.07 temperature 30 4320 < th dose dependent rect. 6 11