Os03g0280000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : ABC transporter, transmembrane region domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os03g0280000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : ABC transporter, transmembrane region domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.49 | 0.218 | 12.4 | 1.19 | 0.25 | 0.802 | -0.981 | 0.762 | 0.379 | 7.72 | 0.5014 | 1376 | -- | -- |
| 21.78 | 0.217 | 12.4 | 1.26 | 0.251 | 0.658 | -0.898 | -- | 0.386 | 7.58 | 0.628 | 1362 | -- | -- |
| 23.98 | 0.228 | 12.3 | 1.25 | 0.246 | 0.626 | -- | -0.171 | 0.393 | 7.51 | 0.6202 | 1355 | -- | -- |
| 23.99 | 0.228 | 12.3 | 1.23 | 0.251 | 0.657 | -- | -- | 0.392 | 7.52 | 0.6114 | 1362 | -- | -- |
| 22.49 | 0.221 | 12.3 | 1.3 | -- | 0.62 | -- | -1.49 | 0.395 | -- | 0.78 | 1027 | -- | -- |
| 26.14 | 0.24 | 12.4 | 1.11 | 0.338 | -- | -0.797 | -- | 0.319 | 8.28 | -- | -- | -- | -- |
| 28.06 | 0.248 | 12.4 | 1.09 | 0.337 | -- | -- | -- | 0.32 | 8.59 | -- | -- | -- | -- |
| 24.76 | 0.232 | 12.4 | 1.2 | -- | 0.724 | -- | -- | 0.376 | -- | 0.78 | 1198 | -- | -- |
| 57.04 | 0.352 | 12.4 | -- | 0.353 | 0.294 | -- | -- | 0.304 | 8.34 | 23.14 | 8751 | -- | -- |
| 34.46 | 0.274 | 12.4 | 1.09 | -- | -- | -- | -- | 0.323 | -- | -- | -- | -- | -- |
| 59.14 | 0.36 | 12.4 | -- | 0.342 | -- | -- | -- | 0.199 | 8.35 | -- | -- | -- | -- |
| 57.08 | 0.352 | 12.4 | -- | -- | 0.67 | -- | -- | 0.347 | -- | 10 | 6692 | -- | -- |
| 65.63 | 0.378 | 12.4 | -- | -- | -- | -- | -- | 0.202 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.80 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 8 |
| 10 | 20.91 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 13 |
| 11 | 20.91 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 15 |
| 58 | 21.01 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 8 |
| 67 | 21.06 | radiation | 1 | 1440 | < th | dose dependent | sin | 19 | NA |
| 72 | 21.07 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 7 |
| 126 | 21.13 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 12 |
| 129 | 21.13 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 14 |
| 212 | 21.25 | radiation | 1 | 1440 | > th | dose independent | sin | 18 | NA |
| 236 | 21.29 | radiation | 1 | 1440 | < th | dose independent | sin | 18 | NA |
| 256 | 21.44 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 257 | 21.44 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 6 |
| 259 | 21.45 | radiation | 10 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 301 | 21.48 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 13 |
| 344 | 21.52 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 4 |
| 379 | 21.60 | radiation | 1 | 720 | < th | dose dependent | rect. | 4 | 15 |
| 483 | 21.80 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 534 | 21.85 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 540 | 21.85 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 4 |
| 643 | 22.01 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 668 | 22.05 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 697 | 22.08 | humidity | 80 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 713 | 22.09 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 14 |
| 722 | 22.10 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 11 |
| 741 | 22.13 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 750 | 22.13 | radiation | 40 | 4320 | < th | dose dependent | rect. | 19 | 10 |
| 753 | 22.14 | radiation | 1 | 720 | < th | dose independent | rect. | 4 | 15 |
| 789 | 22.17 | radiation | 1 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 796 | 22.18 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 799 | 22.19 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 11 |
| 817 | 22.21 | temperature | 25 | 1440 | > th | dose independent | sin | 18 | NA |
| 819 | 22.21 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 14 |
| 832 | 22.21 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 19 |
| 834 | 22.21 | radiation | 1 | 1440 | < th | dose dependent | rect. | 21 | 21 |
| 862 | 22.24 | humidity | 80 | 1440 | < th | dose independent | rect. | 15 | 1 |
| 887 | 22.25 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 5 |
| 890 | 22.25 | humidity | 90 | 720 | > th | dose dependent | rect. | 9 | 16 |
| 900 | 22.25 | temperature | 20 | 720 | > th | dose dependent | rect. | 14 | 19 |
| 924 | 22.26 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 957 | 22.27 | temperature | 10 | 1440 | > th | dose dependent | rect. | 14 | 1 |