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Os03g0279400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Arginine biosynthesis bifunctional protein argJ 1 [Includes: Glutamate N-acetyltransferase (EC 2.3.1.35) (Ornithine acetyltransferase) (Ornithine transacetylase) (OATase); Amino-acid acetyltransferase (EC 2.3.1.1) (N-acetylglutamate synthase) (AGS)] [Contains: Arginine biosynthesis bifunctional protein argJ1 alpha chain; Arginine biosynthesis bifunctional protein argJ1 beta chain].
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 71.99 | 0.399 | 10.2 | 0.87 | 0.371 | -2.45 | -0.233 | -4.43 | 0.56 | 22.8 | 0.1142 | 4349 | -- | -- |
| 84.78 | 0.429 | 10.3 | 0.443 | 0.544 | -1.44 | -0.53 | -- | 0.464 | 0.452 | 1.345 | 4467 | -- | -- |
| 71.87 | 0.395 | 10.2 | 0.873 | 0.427 | -2.46 | -- | -4.44 | 0.564 | 22.9 | 0.09949 | 4369 | -- | -- |
| 74.57 | 0.402 | 10.3 | 0.121 | 0.298 | -1.43 | -- | -- | 0.333 | 23.6 | 1.306 | 14446 | -- | -- |
| 70.65 | 0.391 | 10.2 | 0.488 | -- | -2.56 | -- | -3.81 | 0.495 | -- | 0.009981 | 14226 | -- | -- |
| 119.9 | 0.513 | 10.2 | 0.786 | 0.32 | -- | -0.277 | -- | 0.692 | 23 | -- | -- | -- | -- |
| 120.2 | 0.513 | 10.2 | 0.798 | 0.323 | -- | -- | -- | 0.693 | 22.8 | -- | -- | -- | -- |
| 72.41 | 0.396 | 10.4 | -0.064 | -- | -1.45 | -- | -- | 0.206 | -- | 1.722 | 29915 | -- | -- |
| 72.04 | 0.395 | 10.3 | -- | 0.335 | -1.37 | -- | -- | 0.195 | 23 | 1.303 | 24565 | -- | -- |
| 126.64 | 0.526 | 10.2 | 0.804 | -- | -- | -- | -- | 0.695 | -- | -- | -- | -- | -- |
| 136.97 | 0.547 | 10.2 | -- | 0.329 | -- | -- | -- | 0.604 | 22.9 | -- | -- | -- | -- |
| 72.22 | 0.396 | 10.3 | -- | -- | -1.47 | -- | -- | 0.196 | -- | 1.787 | 29874 | -- | -- |
| 143.71 | 0.56 | 10.2 | -- | -- | -- | -- | -- | 0.606 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 66.67 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 2 | 66.78 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 3 | 66.78 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 13 | 7 |
| 4 | 66.82 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 17 | 3 |
| 5 | 66.83 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 16 | 5 |
| 15 | 66.96 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 20 | 16 |
| 17 | 66.97 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 18 | 66.99 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 25 | 67.12 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 13 | 6 |
| 30 | 67.23 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 13 | 17 |
| 34 | 67.27 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 1 | 11 |
| 35 | 67.27 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 20 | 16 |
| 36 | 67.28 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 38 | 67.28 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 17 | 3 |
| 72 | 67.42 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 16 | 5 |
| 87 | 67.54 | humidity | 50.0 | 43200 | > th | dose independent | sin | 9 | NA |
| 88 | 67.54 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 91 | 67.56 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 3 | 9 |
| 104 | 67.60 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 13 | 5 |
| 108 | 67.61 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 16 | 14 |
| 165 | 67.83 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 175 | 67.87 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 17 | 20 |
| 181 | 67.91 | radiation | 10.0 | 43200 | < th | dose independent | sin | 14 | NA |
| 190 | 67.94 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 201 | 67.98 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 204 | 68.01 | humidity | 50.0 | 43200 | < th | dose independent | sin | 9 | NA |
| 206 | 68.02 | humidity | 60.0 | 43200 | > th | dose independent | sin | 19 | NA |
| 222 | 68.07 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 23 | 2 |
| 228 | 68.09 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 19 | 15 |
| 243 | 68.12 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 252 | 68.16 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 254 | 68.16 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 17 | 20 |
| 298 | 68.25 | humidity | 50.0 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 299 | 68.26 | atmosphere | 1010.0 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 307 | 68.28 | atmosphere | 1010.0 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 350 | 68.40 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 16 | 22 |
| 355 | 68.42 | atmosphere | 1010.0 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 360 | 68.44 | atmosphere | 1010.0 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 368 | 68.45 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 16 | 22 |
| 369 | 68.46 | atmosphere | 1005.0 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 394 | 68.50 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 17 |
| 396 | 68.51 | atmosphere | 1010.0 | 43200 | > th | dose independent | rect. | 19 | 5 |
| 400 | 68.53 | wind | 9.0 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 402 | 68.53 | atmosphere | 1010.0 | 43200 | < th | dose independent | rect. | 19 | 5 |
| 414 | 68.55 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 22 | 14 |
| 438 | 68.60 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 14 |
| 462 | 68.63 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 13 | 23 |
| 483 | 68.66 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 18 | 11 |
| 500 | 68.68 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 16 | 23 |
| 527 | 68.71 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 20 | 22 |
| 548 | 68.73 | atmosphere | 1010.0 | 43200 | < th | dose independent | rect. | 15 | 9 |
| 556 | 68.73 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 4 | 14 |
| 575 | 68.74 | radiation | 1.0 | 14400 | < th | dose dependent | sin | 8 | NA |
| 578 | 68.74 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 4 | 8 |
| 595 | 68.76 | atmosphere | 1010.0 | 43200 | > th | dose independent | rect. | 15 | 9 |
| 669 | 68.81 | humidity | 50.0 | 43200 | < th | dose dependent | no | NA | NA |
| 670 | 68.81 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 4 | 18 |
| 692 | 68.82 | wind | 9.0 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 735 | 68.82 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 10 | 23 |
| 738 | 68.83 | atmosphere | 1010.0 | 43200 | < th | dose independent | sin | 14 | NA |
| 760 | 68.84 | humidity | 60.0 | 43200 | < th | dose independent | sin | 19 | NA |
| 798 | 68.85 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 808 | 68.86 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 853 | 68.88 | humidity | 50.0 | 43200 | < th | dose dependent | sin | 23 | NA |
| 873 | 68.89 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 15 | 17 |
| 876 | 68.89 | humidity | 50.0 | 43200 | < th | dose dependent | sin | 21 | NA |
| 920 | 68.92 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 4 |
| 938 | 68.92 | radiation | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 939 | 68.92 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 4 |
| 947 | 68.93 | atmosphere | 1010.0 | 43200 | > th | dose independent | sin | 15 | NA |
| 978 | 68.94 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 13 | 5 |
