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Os03g0279000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 14.4 (0.0215) R2 : 0.488
β1 : 1.13 (0.0786) R2dD : 0.24 R2D : 0.106
β2 : 0.563 (0.0535) R2dC : 0.125 R2C : 0.0597
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.618 (0.0458) R2dN8 : 0.274 R2N8 : 0.123
σ : 0.403
deviance : 74.23
__
_____
C
peak time of C : 20.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
59.82 0.363 14.4 1.23 0.749 0.67 -0.895 -0.236 0.633 19.5 29.58 261 -- --
59.55 0.359 14.4 1.21 0.787 0.648 -0.904 -- 0.659 19.4 29.25 314 -- --
62.06 0.367 14.4 1.23 0.749 0.67 -- 0.487 0.633 19.5 29.58 261 -- --
61.64 0.366 14.4 1.25 0.814 0.716 -- -- 0.673 19.4 29.3 352 -- --
82.27 0.422 14.4 1.25 -- 0.479 -- -0.144 0.733 -- 31.2 7315 -- --
70.95 0.395 14.4 1.1 0.563 -- -1.03 -- 0.62 20.5 -- -- -- --
74.23 0.403 14.4 1.13 0.563 -- -- -- 0.618 20.8 -- -- -- --
82.02 0.422 14.4 1.28 -- 0.435 -- -- 0.699 -- 31.2 7286 -- --
101.45 0.469 14.5 -- 0.697 0.486 -- -- 0.543 19.9 29.2 353 -- --
92.24 0.449 14.4 1.13 -- -- -- -- 0.614 -- -- -- -- --
107.74 0.486 14.5 -- 0.561 -- -- -- 0.493 20.9 -- -- -- --
121.89 0.514 14.5 -- -- 0.287 -- -- 0.49 -- 31.6 7303 -- --
125.73 0.523 14.5 -- -- -- -- -- 0.489 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 51.90 temperature 30.0 270 < th dose independent rect. 5 19
9 53.30 radiation 40.0 270 < th dose dependent rect. 6 19
16 53.89 temperature 30.0 270 < th dose independent rect. 17 8
22 54.23 humidity 70.0 270 > th dose independent rect. 17 8
26 54.28 humidity 70.0 270 > th dose independent rect. 5 20
28 54.29 humidity 70.0 270 > th dose independent rect. 6 18
36 54.51 temperature 30.0 270 < th dose independent rect. 17 20
42 54.68 temperature 30.0 270 < th dose independent rect. 18 17
46 54.80 temperature 30.0 270 < th dose independent rect. 5 8
51 54.99 temperature 10.0 270 > th dose dependent rect. 24 18
52 55.00 radiation 40.0 270 < th dose independent rect. 9 15
64 55.31 radiation 40.0 270 < th dose independent rect. 18 19
71 55.38 radiation 10.0 270 < th dose independent rect. 16 9
73 55.40 wind 1.0 270 > th dose independent rect. 11 7
77 55.43 radiation 20.0 270 < th dose independent rect. 6 19
92 55.57 atmosphere 995.0 270 > th dose independent rect. 17 8
94 55.62 wind 9.0 270 < th dose independent rect. 1 16
95 55.62 humidity 50.0 270 > th dose independent rect. 5 19
96 55.66 humidity 50.0 270 > th dose independent rect. 6 17
98 55.67 radiation 20.0 270 < th dose dependent rect. 17 8
106 55.73 humidity 70.0 270 > th dose independent rect. 9 15
108 55.76 precipitation 0.1 270 < th dose independent rect. 17 8
110 55.76 precipitation 0.1 270 < th dose dependent rect. 17 8
126 55.94 radiation 40.0 270 < th dose independent rect. 19 16
130 55.99 temperature 15.0 270 > th dose independent rect. 1 16
133 56.01 temperature 10.0 270 > th dose independent rect. 17 8
140 56.01 atmosphere 1015.0 270 < th dose independent rect. 1 16
150 56.08 wind 9.0 270 < th dose independent rect. 17 8
155 56.14 wind 9.0 270 < th dose independent rect. 13 16
161 56.18 precipitation 0.1 270 < th dose independent rect. 1 16
164 56.18 precipitation 0.1 270 < th dose dependent rect. 1 16
167 56.22 temperature 10.0 270 > th dose independent rect. 5 8
168 56.22 atmosphere 995.0 270 > th dose independent rect. 5 8
169 56.22 atmosphere 1015.0 270 < th dose independent rect. 5 8
170 56.22 temperature 10.0 270 > th dose independent rect. 13 16
175 56.23 temperature 10.0 270 > th dose dependent rect. 11 7
195 56.34 precipitation 0.1 270 < th dose independent rect. 5 8
196 56.34 precipitation 0.1 270 < th dose dependent rect. 5 8
207 56.41 humidity 50.0 270 > th dose dependent rect. 6 18
208 56.43 wind 1.0 270 > th dose independent rect. 17 8
212 56.45 wind 1.0 270 > th dose independent rect. 13 16
251 56.69 humidity 50.0 270 > th dose dependent rect. 5 20
259 56.74 wind 1.0 270 > th dose independent rect. 13 4
262 56.75 wind 9.0 270 < th dose independent rect. 5 8
272 56.80 precipitation 0.1 270 < th dose independent rect. 18 17
275 56.80 precipitation 0.1 270 < th dose dependent rect. 18 17
283 56.86 temperature 15.0 270 > th dose independent rect. 11 7
284 56.86 humidity 50.0 270 > th dose independent rect. 5 8
301 56.92 atmosphere 995.0 270 > th dose independent rect. 18 17
310 56.96 wind 9.0 270 < th dose independent rect. 11 7
311 56.96 humidity 70.0 10 > th dose independent rect. 18 9
341 57.07 precipitation 0.1 270 < th dose independent rect. 13 16
343 57.07 atmosphere 995.0 270 > th dose independent rect. 6 17
346 57.07 precipitation 0.1 270 < th dose dependent rect. 13 16
362 57.09 atmosphere 1015.0 270 < th dose independent rect. 11 7
363 57.09 temperature 10.0 270 > th dose independent rect. 18 17
390 57.18 wind 9.0 270 < th dose independent rect. 18 17
400 57.23 precipitation 0.1 270 < th dose independent rect. 11 7
402 57.23 precipitation 0.1 270 < th dose dependent rect. 11 7
427 57.30 humidity 90.0 270 < th dose independent rect. 11 7
428 57.30 radiation 40.0 270 < th dose independent rect. 5 8
433 57.30 temperature 10.0 270 > th dose dependent rect. 13 4
457 57.37 humidity 50.0 270 > th dose independent rect. 18 17
458 57.38 atmosphere 995.0 270 > th dose independent rect. 1 16
464 57.40 radiation 10.0 270 < th dose independent rect. 10 14
475 57.42 humidity 90.0 270 < th dose independent rect. 13 4
517 57.49 atmosphere 1000.0 10 > th dose independent rect. 7 7
522 57.50 wind 1.0 90 > th dose dependent rect. 13 7
524 57.51 temperature 10.0 270 > th dose dependent rect. 12 17
540 57.57 atmosphere 995.0 270 > th dose independent rect. 17 20
542 57.58 radiation 1.0 270 < th dose independent rect. 24 6
546 57.58 precipitation 0.1 270 < th dose independent rect. 6 17
549 57.58 precipitation 0.1 270 < th dose dependent rect. 6 17
566 57.64 humidity 50.0 270 > th dose dependent rect. 23 7
568 57.65 atmosphere 1015.0 270 < th dose independent rect. 23 7
570 57.65 precipitation 0.1 270 < th dose independent rect. 17 20
571 57.65 atmosphere 995.0 270 > th dose dependent rect. 17 7
573 57.65 precipitation 0.1 270 < th dose dependent rect. 17 20
587 57.70 wind 7.0 270 < th dose independent rect. 23 7
590 57.71 temperature 10.0 270 > th dose independent rect. 23 7
591 57.71 temperature 30.0 270 < th dose independent rect. 23 7
592 57.71 humidity 50.0 270 > th dose independent rect. 23 7
595 57.71 atmosphere 995.0 270 > th dose independent rect. 23 7
596 57.71 radiation 20.0 270 < th dose independent rect. 23 7
600 57.71 temperature 10.0 270 > th dose independent rect. 6 17
607 57.74 wind 1.0 270 > th dose independent rect. 1 16
611 57.75 radiation 30.0 270 < th dose dependent rect. 24 6
639 57.78 atmosphere 995.0 270 > th dose dependent rect. 24 6
648 57.80 atmosphere 1015.0 270 < th dose independent rect. 13 16
649 57.80 radiation 40.0 90 < th dose independent rect. 14 16
658 57.83 wind 1.0 270 > th dose independent rect. 5 8
666 57.87 wind 1.0 270 > th dose independent rect. 24 5
678 57.89 precipitation 0.1 270 < th dose independent rect. 23 7
679 57.89 precipitation 0.1 270 < th dose dependent rect. 23 7
700 57.95 humidity 50.0 270 > th dose dependent rect. 6 7
705 57.96 humidity 90.0 270 < th dose independent rect. 18 6
737 57.99 temperature 10.0 270 > th dose independent rect. 13 4
739 57.99 atmosphere 1010.0 270 < th dose independent rect. 13 4
742 57.99 temperature 10.0 270 > th dose independent rect. 17 20
751 58.01 wind 9.0 270 < th dose independent rect. 13 4
755 58.01 radiation 10.0 4320 < th dose dependent rect. 19 9
767 58.05 precipitation 0.1 270 < th dose independent rect. 13 4
774 58.05 precipitation 0.1 270 < th dose dependent rect. 13 4
789 58.07 temperature 30.0 10 < th dose independent rect. 18 9
799 58.09 humidity 50.0 270 > th dose dependent rect. 24 5
844 58.14 atmosphere 995.0 10 > th dose dependent rect. 20 7
887 58.22 radiation 1.0 10 > th dose independent rect. 7 7
890 58.22 radiation 40.0 270 < th dose dependent rect. 18 17
912 58.25 atmosphere 995.0 270 > th dose dependent rect. 1 4
925 58.27 wind 9.0 270 < th dose independent rect. 17 20
963 58.32 temperature 30.0 270 < th dose dependent rect. 6 19
980 58.36 humidity 70.0 270 < th dose independent rect. 13 5