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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0277700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF26 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.85 (0.545) R2 : 0.16
β1 : 11.5 (1.66) R2dD : 7.21 R2D : -20.2
β2 : -- (--) R2dC : -- R2C : --
β3 : 144 (20.8) R2dE : 486 R2E : -488
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 434 (63.5) R2dD*E : 469 R2D*E : -467
γ1 : -0.159 (0.11) R2dN8 : 0.00524 R2N8 : -12.7
σ : 0.954
deviance : 419.67
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C
peak time of C : --
E
wheather : radiation
threshold : 0.7749
memory length : 1401
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 11
open length of G : 1.01

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
414.74 0.949 6.85 11.4 0.0528 144 -1.05 433 -0.166 0.572 1 1442 11 1
484.03 1.03 3.17 -0.132 0.252 -0.328 -1.55 -- -0.263 3.65 1 1442 11 1
418.47 0.953 6.84 11.4 0.151 144 -- 433 -0.163 5.04 0.9949 1401 11 0.959
463.52 1 3.13 -0.222 0.394 1.3 -- -- -0.264 4.52 0.2635 1446 11.3 0.933
419.67 0.954 6.85 11.5 -- 144 -- 434 -0.159 -- 0.7749 1401 11 1.01
484.14 1.03 3.17 -0.128 0.253 -- -1.55 -- -0.261 3.62 -- -- -- --
490.57 1.04 3.16 -0.102 0.285 -- -- -- -0.253 5.36 -- -- -- --
457.42 0.996 3.15 0.117 -- 1.83 -- -- -0.136 -- 4.08 1451 11.3 0.817
457.66 0.996 3.16 -- 0.354 1.8 -- -- -0.218 4.62 1.338 1333 11.3 0.871
494.82 1.04 3.17 -0.0925 -- -- -- -- -0.246 -- -- -- -- --
490.85 1.04 3.16 -- 0.284 -- -- -- -0.242 5.38 -- -- -- --
457.69 0.996 3.14 -- -- 1.81 -- -- -0.153 -- 4.09 1378 11.3 0.867
495.04 1.04 3.16 -- -- -- -- -- -0.236 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 414.74 radiation 1 1440 < th dose independent rect. 11 1
2 414.74 radiation 1 1440 < th dose dependent rect. 11 1
3 416.27 wind 7 1440 > th dose dependent rect. 23 2
6 417.84 wind 7 1440 > th dose independent rect. 23 2
8 418.10 wind 5 1440 > th dose independent rect. 21 5
9 418.14 wind 5 1440 < th dose independent rect. 21 5
10 418.36 wind 7 1440 < th dose independent rect. 22 3
65 423.52 wind 3 1440 > th dose dependent rect. 1 1
75 423.79 wind 7 1440 < th dose independent rect. 21 11
178 427.37 wind 7 4320 > th dose independent rect. 17 3
209 428.36 wind 7 4320 > th dose dependent rect. 17 3
210 428.37 wind 7 4320 < th dose independent rect. 17 4
299 430.89 wind 5 1440 > th dose independent sin 12 NA
303 430.96 wind 5 1440 < th dose independent sin 12 NA
307 431.05 wind 9 1440 < th dose dependent rect. 22 1
349 431.78 wind 5 1440 > th dose dependent sin 12 NA
408 432.56 wind 9 1440 < th dose dependent rect. 21 6
427 432.97 wind 9 1440 < th dose dependent rect. 1 2
449 433.28 wind 7 4320 > th dose independent rect. 15 11
460 433.51 wind 7 1440 < th dose independent rect. 14 18
479 433.70 wind 7 1440 < th dose independent rect. 14 16
493 433.85 wind 5 1440 > th dose dependent rect. 14 18
501 433.91 wind 5 1440 > th dose independent rect. 13 18
550 434.39 wind 7 4320 < th dose independent rect. 15 11
636 435.10 wind 7 4320 > th dose dependent rect. 15 8
698 435.59 wind 7 4320 > th dose dependent rect. 15 11
919 437.21 wind 9 1440 < th dose dependent rect. 13 17