Os03g0276700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0276700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.63 | 0.375 | 9.35 | 1.12 | 1.23 | 0.975 | -0.416 | 0.181 | 0.203 | 20.4 | 24.1 | 14 | -- | -- |
| 63.64 | 0.372 | 9.35 | 1.1 | 1.23 | 0.99 | -0.423 | -- | 0.196 | 20.4 | 24.1 | 13 | -- | -- |
| 64.16 | 0.373 | 9.34 | 1.15 | 1.23 | 0.952 | -- | 0.312 | 0.21 | 20.4 | 24.09 | 13 | -- | -- |
| 64.21 | 0.373 | 9.35 | 1.11 | 1.23 | 0.98 | -- | -- | 0.197 | 20.4 | 24.1 | 13 | -- | -- |
| 118.83 | 0.508 | 9.34 | 0.658 | -- | 1.42 | -- | -1.97 | 0.174 | -- | 24.3 | 476 | -- | -- |
| 78.99 | 0.417 | 9.32 | 1.27 | 1.34 | -- | -0.155 | -- | 0.317 | 19.3 | -- | -- | -- | -- |
| 79.05 | 0.416 | 9.32 | 1.27 | 1.34 | -- | -- | -- | 0.317 | 19.3 | -- | -- | -- | -- |
| 119.93 | 0.51 | 9.33 | 1.01 | -- | 1.37 | -- | -- | 0.151 | -- | 24.1 | 393 | -- | -- |
| 93.86 | 0.451 | 9.39 | -- | 1.2 | 1.27 | -- | -- | 0.00674 | 20.8 | 22.5 | 46 | -- | -- |
| 174.39 | 0.617 | 9.29 | 1.25 | -- | -- | -- | -- | 0.294 | -- | -- | -- | -- | -- |
| 121.85 | 0.516 | 9.36 | -- | 1.33 | -- | -- | -- | 0.175 | 19.3 | -- | -- | -- | -- |
| 145.84 | 0.562 | 9.36 | -- | -- | 1.53 | -- | -- | 0.00711 | -- | 23.7 | 398 | -- | -- |
| 215.65 | 0.685 | 9.32 | -- | -- | -- | -- | -- | 0.155 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.83 | temperature | 20 | 90 | > th | dose dependent | sin | 1 | NA |
| 8 | 60.82 | temperature | 25 | 270 | > th | dose independent | sin | 3 | NA |
| 18 | 61.15 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 26 | 61.35 | temperature | 25 | 270 | < th | dose independent | sin | 4 | NA |
| 31 | 61.48 | temperature | 25 | 30 | > th | dose dependent | rect. | 9 | 7 |
| 34 | 61.53 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 15 |
| 52 | 61.82 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 9 |
| 94 | 62.45 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 21 |
| 97 | 62.47 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 15 |
| 99 | 62.47 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 103 | 62.49 | temperature | 25 | 30 | > th | dose dependent | rect. | 24 | 16 |
| 105 | 62.50 | temperature | 25 | 30 | > th | dose dependent | rect. | 6 | 10 |
| 106 | 62.50 | temperature | 25 | 30 | > th | dose dependent | rect. | 4 | 12 |
| 107 | 62.50 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 12 |
| 115 | 62.56 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 12 |
| 116 | 62.57 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 10 |
| 118 | 62.58 | temperature | 25 | 270 | > th | dose independent | rect. | 4 | 11 |
| 121 | 62.60 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 18 |
| 122 | 62.60 | temperature | 25 | 30 | > th | dose dependent | rect. | 21 | 19 |
| 133 | 62.66 | temperature | 30 | 90 | < th | dose dependent | sin | 0 | NA |
| 135 | 62.68 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 9 |
| 160 | 62.79 | temperature | 25 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 184 | 62.90 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 13 |
| 193 | 62.94 | temperature | 25 | 270 | > th | dose independent | rect. | 22 | 20 |
| 212 | 63.03 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 22 |
| 226 | 63.10 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 16 |
| 331 | 63.52 | temperature | 25 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 403 | 63.84 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 16 |
| 552 | 64.34 | temperature | 25 | 270 | > th | dose independent | rect. | 17 | 23 |
| 596 | 64.44 | temperature | 25 | 10 | > th | dose dependent | rect. | 6 | 19 |
| 614 | 64.48 | temperature | 25 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 627 | 64.51 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 21 |
| 654 | 64.57 | temperature | 25 | 10 | > th | dose independent | rect. | 9 | 9 |
| 655 | 64.57 | temperature | 25 | 90 | > th | dose independent | rect. | 9 | 9 |
| 669 | 64.61 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 677 | 64.62 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 700 | 64.69 | temperature | 25 | 90 | > th | dose independent | rect. | 9 | 22 |
| 701 | 64.69 | temperature | 25 | 10 | > th | dose dependent | rect. | 6 | 16 |
| 725 | 64.75 | temperature | 25 | 10 | > th | dose independent | rect. | 9 | 7 |
| 780 | 64.85 | temperature | 25 | 270 | < th | dose independent | rect. | 14 | 23 |
| 798 | 64.87 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 808 | 64.90 | temperature | 25 | 90 | > th | dose independent | rect. | 9 | 11 |
| 821 | 64.92 | temperature | 25 | 270 | < th | dose independent | no | NA | NA |
| 851 | 64.97 | temperature | 25 | 270 | > th | dose independent | rect. | 4 | 22 |
| 905 | 65.08 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 23 |
| 931 | 65.12 | temperature | 25 | 270 | > th | dose independent | no | NA | NA |
| 973 | 65.20 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |