Os03g0274800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein kinase APK1A, chloroplast precursor (EC 2.7.1.-).
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Os03g0274800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protein kinase APK1A, chloroplast precursor (EC 2.7.1.-).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.39 | 0.279 | 12 | 0.249 | 0.9 | -0.798 | 0.672 | -0.426 | 0.542 | 3.88 | 1002 | 6 | -- | -- |
| 35.36 | 0.279 | 12 | 0.266 | 0.899 | -0.868 | 0.678 | -- | 0.54 | 3.88 | 1002 | 5 | -- | -- |
| 36.65 | 0.284 | 12 | 0.221 | 0.903 | -0.722 | -- | -0.91 | 0.538 | 3.83 | 1003 | 4 | -- | -- |
| 36.69 | 0.284 | 12 | 0.257 | 0.902 | -0.878 | -- | -- | 0.537 | 3.84 | 1002 | 2 | -- | -- |
| 81.34 | 0.422 | 12 | 0.321 | -- | -1.03 | -- | 0.471 | 0.555 | -- | 1003 | 4 | -- | -- |
| 44.73 | 0.314 | 12 | 0.176 | 0.916 | -- | 0.698 | -- | 0.584 | 3.86 | -- | -- | -- | -- |
| 46.15 | 0.318 | 12 | 0.167 | 0.919 | -- | -- | -- | 0.58 | 3.82 | -- | -- | -- | -- |
| 81.34 | 0.422 | 12 | 0.301 | -- | -0.948 | -- | -- | 0.555 | -- | 1003 | 2 | -- | -- |
| 38.39 | 0.29 | 12 | -- | 0.908 | -0.817 | -- | -- | 0.511 | 3.83 | 1002 | 2 | -- | -- |
| 92.7 | 0.45 | 12 | 0.205 | -- | -- | -- | -- | 0.604 | -- | -- | -- | -- | -- |
| 46.88 | 0.32 | 12 | -- | 0.923 | -- | -- | -- | 0.561 | 3.82 | -- | -- | -- | -- |
| 83.68 | 0.427 | 12.1 | -- | -- | -0.88 | -- | -- | 0.525 | -- | 1003 | 2 | -- | -- |
| 93.8 | 0.452 | 12 | -- | -- | -- | -- | -- | 0.582 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.39 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 1 | 21 |
| 3 | 32.88 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 2 | 19 |
| 7 | 33.53 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 4 | 19 |
| 8 | 33.63 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 11 | 20 |
| 10 | 33.67 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 15 | 15 |
| 30 | 34.26 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 11 | 10 |
| 47 | 34.68 | wind | 9 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 55 | 34.84 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 6 | 20 |
| 73 | 35.11 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 11 | 23 |
| 103 | 35.56 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 115 | 35.65 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 15 | 17 |
| 136 | 35.72 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 141 | 35.73 | atmosphere | 1000 | 270 | > th | dose independent | no | NA | NA |
| 147 | 35.78 | atmosphere | 1000 | 270 | < th | dose independent | no | NA | NA |
| 161 | 35.82 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 7 | 21 |
| 164 | 35.86 | wind | 9 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 167 | 35.87 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 17 | 15 |
| 171 | 35.87 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 13 | 23 |
| 172 | 35.87 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 19 | 23 |
| 179 | 35.90 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 181 | 35.91 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 6 | 23 |
| 217 | 36.00 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 21 | 23 |
| 219 | 36.01 | wind | 9 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 247 | 36.07 | radiation | 10 | 90 | < th | dose independent | rect. | 4 | 19 |
| 255 | 36.09 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 9 | 23 |
| 261 | 36.10 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 13 | 19 |
| 265 | 36.10 | atmosphere | 1000 | 30 | < th | dose independent | rect. | 13 | 23 |
| 266 | 36.10 | atmosphere | 1000 | 30 | < th | dose independent | rect. | 23 | 23 |
| 270 | 36.11 | atmosphere | 1000 | 30 | < th | dose independent | rect. | 15 | 23 |
| 272 | 36.11 | atmosphere | 1000 | 30 | < th | dose independent | rect. | 17 | 23 |
| 274 | 36.11 | atmosphere | 1000 | 30 | < th | dose independent | rect. | 21 | 23 |
| 287 | 36.13 | atmosphere | 1000 | 30 | < th | dose independent | rect. | 1 | 23 |
| 291 | 36.14 | atmosphere | 1000 | 10 | > th | dose independent | no | NA | NA |
| 322 | 36.19 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 14 | 16 |
| 324 | 36.19 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 7 | 21 |
| 354 | 36.26 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 8 | 20 |
| 394 | 36.34 | temperature | 30 | 4320 | < th | dose independent | rect. | 9 | 2 |
| 405 | 36.35 | temperature | 30 | 4320 | < th | dose independent | rect. | 2 | 9 |
| 427 | 36.39 | temperature | 30 | 4320 | < th | dose independent | rect. | 22 | 13 |
| 437 | 36.40 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 13 | 23 |
| 443 | 36.40 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 444 | 36.40 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 453 | 36.41 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 454 | 36.42 | temperature | 30 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 462 | 36.43 | atmosphere | 1005 | 10 | < th | dose dependent | no | NA | NA |
| 466 | 36.43 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 487 | 36.45 | atmosphere | 1005 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 488 | 36.45 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 502 | 36.46 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 506 | 36.47 | atmosphere | 1005 | 720 | < th | dose dependent | no | NA | NA |
| 512 | 36.47 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 513 | 36.47 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 521 | 36.48 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 564 | 36.50 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 565 | 36.50 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 591 | 36.53 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 9 | 14 |
| 599 | 36.54 | wind | 1 | 14400 | < th | dose independent | rect. | 9 | 2 |
| 605 | 36.55 | atmosphere | 1000 | 270 | < th | dose independent | sin | 18 | NA |
| 615 | 36.55 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 1 | 23 |
| 619 | 36.55 | atmosphere | 1005 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 622 | 36.56 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 3 | 23 |
| 638 | 36.57 | wind | 1 | 14400 | < th | dose dependent | rect. | 9 | 2 |
| 732 | 36.64 | temperature | 25 | 4320 | > th | dose dependent | rect. | 5 | 3 |
| 741 | 36.65 | temperature | 30 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 759 | 36.66 | temperature | 25 | 4320 | > th | dose dependent | rect. | 1 | 7 |
| 851 | 36.73 | atmosphere | 1005 | 720 | < th | dose dependent | sin | 20 | NA |
| 892 | 36.77 | wind | 9 | 14400 | > th | dose dependent | rect. | 22 | 16 |
| 912 | 36.79 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 12 | 9 |
| 944 | 36.81 | radiation | 30 | 90 | < th | dose dependent | rect. | 4 | 19 |
| 951 | 36.82 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 17 | 15 |
| 982 | 36.84 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 15 | 23 |