FiT-DB / Search/ Help/ Sample detail

Os03g0272400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.6 (0.0203) R2 : 0.352
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.797 (0.0517) R2dC : 0.338 R2C : 0.338
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.119 (0.0428) R2dN8 : 0.0141 R2N8 : 0.0139
σ : 0.384
deviance : 67.26
__
_____
C
peak time of C : 3.77
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
56.15 0.352 10.6 -0.24 0.567 0.458 0.924 -1.02 0.127 5.27 19.97 143 -- --
60.15 0.361 10.6 -0.246 0.545 0.475 0.937 -- 0.119 5.31 19.99 145 -- --
57.9 0.354 10.6 -0.22 0.546 0.467 -- -0.786 0.126 5.1 19.49 169 -- --
60.16 0.361 10.6 -0.216 0.549 0.473 -- -- 0.121 5.07 19.99 169 -- --
67.46 0.383 10.6 -0.137 -- 0.804 -- -0.625 0.185 -- 18.07 300 -- --
65.91 0.381 10.6 -0.226 0.802 -- 0.00452 -- 0.0934 3.77 -- -- -- --
65.91 0.38 10.6 -0.226 0.802 -- -- -- 0.0934 3.76 -- -- -- --
68.28 0.385 10.6 -0.166 -- 0.817 -- -- 0.178 -- 17.77 323 -- --
61.21 0.364 10.6 -- 0.538 0.477 -- -- 0.146 5.13 19.64 171 -- --
101.38 0.47 10.6 -0.193 -- -- -- -- 0.115 -- -- -- -- --
67.26 0.384 10.6 -- 0.797 -- -- -- 0.119 3.77 -- -- -- --
67.16 0.382 10.6 -- -- 0.755 -- -- 0.152 -- 5.59 427 -- --
102.36 0.472 10.6 -- -- -- -- -- 0.136 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 53.33 radiation 30.0 90 < th dose independent rect. 17 18
2 53.47 radiation 20.0 270 < th dose independent rect. 15 18
7 53.80 radiation 30.0 270 < th dose independent rect. 2 8
8 53.81 precipitation 0.1 270 < th dose independent rect. 15 17
9 53.81 precipitation 0.1 270 < th dose dependent rect. 15 17
16 53.89 radiation 40.0 270 < th dose dependent rect. 2 9
21 54.01 precipitation 0.1 270 < th dose independent rect. 14 7
22 54.01 precipitation 0.1 270 < th dose dependent rect. 14 7
25 54.09 atmosphere 995.0 10 > th dose dependent rect. 17 16
27 54.11 wind 1.0 270 > th dose independent rect. 15 17
29 54.14 wind 1.0 270 > th dose independent rect. 8 7
31 54.17 temperature 10.0 270 > th dose independent rect. 14 7
32 54.17 temperature 10.0 270 > th dose independent rect. 21 17
33 54.17 atmosphere 995.0 270 > th dose independent rect. 21 17
36 54.18 radiation 40.0 270 < th dose dependent rect. 15 18
37 54.19 wind 1.0 270 > th dose independent rect. 14 7
38 54.19 radiation 40.0 270 < th dose independent rect. 14 7
45 54.25 humidity 50.0 270 > th dose independent rect. 21 17
49 54.30 temperature 10.0 270 > th dose independent rect. 8 7
50 54.30 atmosphere 1015.0 270 < th dose independent rect. 8 7
51 54.30 temperature 10.0 270 > th dose independent rect. 15 17
53 54.33 precipitation 0.1 270 < th dose independent rect. 8 7
56 54.33 precipitation 0.1 270 < th dose dependent rect. 8 7
60 54.35 wind 7.0 270 < th dose independent rect. 15 17
62 54.36 wind 9.0 270 < th dose independent rect. 8 7
65 54.37 atmosphere 995.0 270 > th dose independent rect. 8 7
71 54.41 wind 9.0 270 < th dose independent rect. 14 7
75 54.42 humidity 50.0 270 > th dose independent rect. 8 7
78 54.43 wind 9.0 270 < th dose independent rect. 21 17
79 54.43 atmosphere 1015.0 270 < th dose independent rect. 21 17
88 54.52 precipitation 0.1 270 < th dose independent rect. 21 17
91 54.52 precipitation 0.1 270 < th dose dependent rect. 21 17
98 54.57 atmosphere 995.0 270 > th dose independent rect. 14 7
102 54.58 atmosphere 1015.0 270 < th dose independent rect. 14 7
119 54.65 atmosphere 995.0 270 > th dose independent rect. 15 17
135 54.73 temperature 20.0 270 > th dose independent rect. 21 5
139 54.73 humidity 60.0 90 > th dose independent rect. 17 16
153 54.78 radiation 1.0 270 > th dose independent rect. 8 7
155 54.78 wind 1.0 90 > th dose independent rect. 17 16
158 54.78 atmosphere 995.0 90 > th dose independent rect. 17 16
161 54.79 temperature 10.0 90 > th dose independent rect. 17 16
181 54.85 precipitation 0.1 10 < th dose independent rect. 17 16
183 54.85 precipitation 0.1 10 < th dose dependent rect. 17 16
204 54.91 temperature 30.0 90 < th dose independent rect. 17 16
207 54.94 wind 9.0 270 < th dose dependent rect. 16 16
227 55.01 humidity 50.0 270 > th dose independent rect. 15 17
228 55.01 radiation 10.0 90 < th dose independent rect. 6 17
242 55.05 humidity 50.0 270 > th dose independent rect. 14 7
246 55.05 radiation 1.0 270 > th dose dependent rect. 7 7
283 55.11 radiation 10.0 90 < th dose independent sin 21 NA
327 55.22 temperature 20.0 10 > th dose independent rect. 22 6
339 55.24 radiation 10.0 270 < th dose independent rect. 2 20
366 55.29 radiation 10.0 270 < th dose independent rect. 1 22
382 55.32 atmosphere 995.0 10 > th dose independent rect. 17 16
401 55.35 radiation 10.0 270 < th dose independent rect. 3 18
406 55.37 temperature 10.0 10 > th dose independent rect. 9 8
408 55.37 atmosphere 1015.0 10 < th dose independent rect. 9 8
409 55.37 precipitation 0.1 10 < th dose independent rect. 9 8
410 55.37 temperature 10.0 10 > th dose independent rect. 17 16
414 55.37 precipitation 0.1 10 < th dose dependent rect. 9 8
489 55.48 radiation 10.0 90 < th dose dependent sin 21 NA
503 55.50 radiation 40.0 10 < th dose dependent rect. 17 18
506 55.52 atmosphere 995.0 10 > th dose independent rect. 9 8
508 55.52 humidity 50.0 10 > th dose independent rect. 17 16
519 55.55 atmosphere 995.0 270 > th dose dependent rect. 8 7
531 55.57 wind 5.0 10 < th dose independent rect. 16 17
533 55.58 radiation 40.0 270 < th dose dependent rect. 14 6
557 55.63 humidity 70.0 270 > th dose independent rect. 2 8
580 55.67 humidity 60.0 10 > th dose independent rect. 17 18
616 55.72 radiation 20.0 90 < th dose dependent rect. 6 17
637 55.77 temperature 30.0 30 < th dose independent rect. 17 18
653 55.80 wind 5.0 270 < th dose independent rect. 2 7
656 55.80 radiation 40.0 270 < th dose independent rect. 3 17
691 55.85 radiation 1.0 270 > th dose dependent sin 4 NA
692 55.85 atmosphere 1015.0 270 < th dose dependent rect. 15 5
696 55.86 humidity 50.0 4320 > th dose independent rect. 18 16
706 55.87 humidity 60.0 270 > th dose dependent rect. 20 7
718 55.89 precipitation 0.1 10 < th dose independent rect. 17 18
722 55.89 precipitation 0.1 10 < th dose dependent rect. 17 18
734 55.91 temperature 10.0 1440 > th dose independent rect. 10 8
738 55.91 temperature 10.0 1440 > th dose independent rect. 18 16
754 55.92 radiation 30.0 90 < th dose dependent rect. 3 21
780 55.97 radiation 1.0 10 > th dose independent rect. 9 8
799 56.00 radiation 40.0 270 < th dose independent rect. 2 19
802 56.00 radiation 20.0 270 < th dose dependent rect. 1 22
806 56.01 humidity 90.0 270 < th dose independent rect. 14 7
812 56.02 temperature 30.0 270 < th dose independent rect. 2 8
813 56.02 humidity 90.0 10 < th dose independent rect. 17 16
855 56.08 wind 5.0 10 < th dose independent rect. 16 19
859 56.08 radiation 40.0 10 < th dose dependent rect. 4 20
883 56.12 atmosphere 1015.0 270 < th dose independent rect. 15 17
888 56.13 precipitation 0.1 270 < th dose independent rect. 2 7
892 56.13 precipitation 0.1 270 < th dose dependent rect. 2 7
902 56.15 wind 9.0 10 < th dose independent rect. 17 18
903 56.15 atmosphere 995.0 10 > th dose independent rect. 17 18
933 56.18 temperature 10.0 10 > th dose independent rect. 11 6
935 56.18 atmosphere 1015.0 10 < th dose independent rect. 11 6
936 56.18 precipitation 0.1 10 < th dose independent rect. 11 6
940 56.18 temperature 10.0 10 > th dose independent rect. 17 18
942 56.18 radiation 10.0 10 < th dose dependent sin 20 NA
945 56.18 precipitation 0.1 10 < th dose dependent rect. 11 6
959 56.19 temperature 15.0 10 > th dose independent rect. 22 19
966 56.19 radiation 40.0 270 < th dose dependent rect. 3 17