Os03g0271900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase A1, pepsin family protein.
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Os03g0271900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase A1, pepsin family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 279.73 | 0.786 | 3.79 | -1.58 | 0.368 | 1.96 | -1.34 | -10.5 | -0.302 | 12 | 999.4 | 1713 | -- | -- |
| 280.07 | 0.779 | 3.7 | -1.05 | 0.338 | 2.09 | -1.35 | -- | -0.3 | 12.6 | 994.6 | 2662 | -- | -- |
| 284.68 | 0.786 | 3.77 | -1.47 | 0.392 | 1.79 | -- | -9.44 | -0.322 | 10.4 | 998.8 | 2156 | -- | -- |
| 285.32 | 0.787 | 3.7 | -1.07 | 0.406 | 2.45 | -- | -- | -0.298 | 10.1 | 994.6 | 1957 | -- | -- |
| 294.53 | 0.799 | 3.78 | -1.48 | -- | 1.71 | -- | -9.02 | -0.301 | -- | 998.7 | 2206 | -- | -- |
| 295.37 | 0.806 | 3.7 | -1.09 | 0.399 | -- | -1.51 | -- | -0.331 | 12 | -- | -- | -- | -- |
| 303.18 | 0.815 | 3.7 | -1.15 | 0.452 | -- | -- | -- | -0.342 | 10.3 | -- | -- | -- | -- |
| 295.09 | 0.8 | 3.71 | -1.07 | -- | 2.64 | -- | -- | -0.309 | -- | 994.6 | 2093 | -- | -- |
| 314.16 | 0.826 | 3.67 | -- | 0.406 | 2.84 | -- | -- | -0.187 | 10.2 | 994.6 | 2670 | -- | -- |
| 315.62 | 0.83 | 3.72 | -1.16 | -- | -- | -- | -- | -0.343 | -- | -- | -- | -- | -- |
| 338.25 | 0.86 | 3.68 | -- | 0.459 | -- | -- | -- | -0.214 | 10.5 | -- | -- | -- | -- |
| 324.23 | 0.839 | 3.68 | -- | -- | 2.99 | -- | -- | -0.187 | -- | 994.1 | 2647 | -- | -- |
| 351.14 | 0.875 | 3.69 | -- | -- | -- | -- | -- | -0.215 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 269.35 | atmosphere | 1005.0 | 720 | < th | dose dependent | rect. | 11 | 1 |
| 4 | 270.41 | atmosphere | 1005.0 | 270 | < th | dose dependent | rect. | 8 | 12 |
| 5 | 270.48 | atmosphere | 1005.0 | 270 | < th | dose dependent | rect. | 8 | 9 |
| 13 | 270.77 | atmosphere | 1005.0 | 90 | < th | dose dependent | rect. | 10 | 13 |
| 14 | 270.78 | atmosphere | 1005.0 | 90 | < th | dose dependent | rect. | 10 | 10 |
| 69 | 272.36 | atmosphere | 1005.0 | 270 | < th | dose dependent | sin | 23 | NA |
| 127 | 274.30 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 1 | 10 |
| 160 | 274.78 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 23 | 12 |
| 177 | 275.06 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 8 | 4 |
| 182 | 275.16 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 21 | 14 |
| 186 | 275.19 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 16 | 11 |
| 191 | 275.33 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 10 | 1 |
| 207 | 275.55 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 11 | 5 |
| 243 | 275.96 | radiation | 40.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 259 | 275.96 | radiation | 40.0 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 299 | 276.17 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 11 | 1 |
| 343 | 276.65 | temperature | 25.0 | 270 | < th | dose independent | sin | 12 | NA |
| 361 | 276.84 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 16 | 15 |
| 362 | 276.86 | radiation | 30.0 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 392 | 277.02 | temperature | 25.0 | 270 | < th | dose independent | rect. | 18 | 11 |
| 399 | 277.11 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 5 | 6 |
| 439 | 277.53 | radiation | 30.0 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 480 | 277.80 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 3 | 1 |
| 483 | 277.84 | temperature | 25.0 | 270 | < th | dose independent | rect. | 14 | 15 |
| 484 | 277.85 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 1 | 5 |
| 494 | 278.03 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 23 | 7 |
| 495 | 278.03 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 21 | 9 |
| 510 | 278.16 | wind | 3.0 | 720 | > th | dose independent | rect. | 8 | 1 |
| 561 | 278.60 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 1 | 1 |
| 562 | 278.60 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 587 | 278.82 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 16 | 9 |
| 588 | 278.84 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 1 | 1 |
| 590 | 278.84 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 603 | 278.91 | temperature | 25.0 | 720 | > th | dose independent | rect. | 21 | 2 |
| 609 | 278.98 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 8 | 3 |
| 610 | 278.99 | temperature | 25.0 | 720 | < th | dose independent | rect. | 18 | 7 |
| 615 | 279.01 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 19 | 12 |
| 625 | 279.08 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 11 | 3 |
| 637 | 279.15 | atmosphere | 1005.0 | 90 | < th | dose independent | rect. | 10 | 1 |
| 641 | 279.19 | temperature | 20.0 | 90 | < th | dose independent | rect. | 10 | 4 |
| 647 | 279.22 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 21 | 1 |
| 652 | 279.27 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 8 | 5 |
| 657 | 279.29 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 673 | 279.35 | atmosphere | 1000.0 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 679 | 279.37 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 684 | 279.40 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 706 | 279.49 | atmosphere | 1000.0 | 1440 | < th | dose independent | rect. | 18 | 4 |
| 708 | 279.50 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 5 | 1 |
| 713 | 279.52 | atmosphere | 1000.0 | 1440 | < th | dose independent | rect. | 18 | 2 |
| 720 | 279.54 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 7 | 8 |
| 731 | 279.61 | temperature | 20.0 | 10 | < th | dose independent | rect. | 11 | 1 |
| 737 | 279.61 | humidity | 90.0 | 90 | > th | dose independent | rect. | 10 | 1 |
| 739 | 279.61 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 10 | 1 |
| 756 | 279.61 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 11 | 1 |
| 762 | 279.61 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 10 | 1 |
| 764 | 279.61 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 10 | 1 |
| 778 | 279.61 | atmosphere | 1000.0 | 1440 | < th | dose dependent | rect. | 13 | 5 |
| 786 | 279.63 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 797 | 279.64 | atmosphere | 1000.0 | 1440 | > th | dose independent | rect. | 18 | 7 |
| 820 | 279.66 | atmosphere | 1000.0 | 1440 | < th | dose dependent | rect. | 12 | 13 |
| 846 | 279.69 | atmosphere | 1000.0 | 1440 | < th | dose dependent | rect. | 14 | 1 |
| 854 | 279.70 | atmosphere | 1000.0 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 879 | 279.73 | atmosphere | 1000.0 | 1440 | < th | dose dependent | sin | 18 | NA |
| 902 | 279.75 | wind | 9.0 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 903 | 279.75 | atmosphere | 995.0 | 4320 | < th | dose independent | rect. | 1 | 1 |
| 908 | 279.75 | atmosphere | 995.0 | 4320 | < th | dose independent | rect. | 21 | 1 |