Os03g0270200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Splicing factor PWI domain containing protein.
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Os03g0270200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Splicing factor PWI domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.09 | 0.278 | 11.1 | 0.13 | 0.228 | 0.656 | -0.198 | 0.711 | 0.13 | 4.58 | 20.6 | 1374 | -- | -- |
| 36.12 | 0.28 | 11.1 | -0.00647 | 0.207 | 0.585 | -0.0133 | -- | 0.112 | 4.2 | 20.66 | 1347 | -- | -- |
| 35.11 | 0.276 | 11.1 | 0.139 | 0.225 | 0.631 | -- | 0.691 | 0.129 | 4.32 | 20.82 | 1345 | -- | -- |
| 36.08 | 0.28 | 11.2 | -0.00405 | 0.223 | 0.559 | -- | -- | 0.099 | 4.38 | 20.71 | 1304 | -- | -- |
| 37.71 | 0.286 | 11.1 | 0.138 | -- | 0.634 | -- | 0.646 | 0.13 | -- | 20.85 | 1240 | -- | -- |
| 43.48 | 0.309 | 11.1 | 0.227 | 0.248 | -- | -0.209 | -- | 0.234 | 4.36 | -- | -- | -- | -- |
| 43.58 | 0.309 | 11.1 | 0.229 | 0.246 | -- | -- | -- | 0.235 | 4.04 | -- | -- | -- | -- |
| 38.61 | 0.289 | 11.2 | 0.00131 | -- | 0.568 | -- | -- | 0.0996 | -- | 20.7 | 1229 | -- | -- |
| 36.08 | 0.28 | 11.2 | -- | 0.221 | 0.554 | -- | -- | 0.101 | 4.39 | 20.73 | 1304 | -- | -- |
| 46.88 | 0.32 | 11.1 | 0.239 | -- | -- | -- | -- | 0.241 | -- | -- | -- | -- | -- |
| 44.96 | 0.314 | 11.1 | -- | 0.251 | -- | -- | -- | 0.209 | 4.03 | -- | -- | -- | -- |
| 38.61 | 0.289 | 11.2 | -- | -- | 0.568 | -- | -- | 0.103 | -- | 20.72 | 1228 | -- | -- |
| 48.39 | 0.325 | 11.1 | -- | -- | -- | -- | -- | 0.215 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.14 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 13 |
| 11 | 35.24 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 13 |
| 26 | 35.30 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 76 | 35.39 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 92 | 35.41 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 138 | 35.46 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 197 | 35.52 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 205 | 35.52 | temperature | 20 | 1440 | > th | dose independent | rect. | 24 | 23 |
| 214 | 35.53 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 276 | 35.59 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 314 | 35.65 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 321 | 35.65 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 328 | 35.67 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 3 |
| 390 | 35.74 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 391 | 35.75 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 3 |
| 460 | 35.86 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 509 | 35.94 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 589 | 36.08 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 21 |
| 655 | 36.17 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 700 | 36.23 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 958 | 36.47 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 999 | 36.51 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 1 |