Os03g0269400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0269400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 372.76 | 0.907 | 3.16 | 1.09 | 0.0583 | 2.14 | -0.866 | 2.01 | 0.421 | 5.06 | 24.2 | 3960 | -- | -- |
| 374.28 | 0.901 | 3.1 | 1.25 | 0.0977 | 1.75 | -0.938 | -- | 0.478 | 4.74 | 26.56 | 2590 | -- | -- |
| 374.62 | 0.901 | 3.16 | 1.08 | 0.0567 | 2.11 | -- | 2 | 0.42 | 4.43 | 24.38 | 3960 | -- | -- |
| 375.91 | 0.903 | 3.1 | 1.24 | 0.136 | 1.72 | -- | -- | 0.482 | 1.38 | 27.52 | 2516 | -- | -- |
| 374.79 | 0.902 | 3.16 | 1.07 | -- | 2.13 | -- | 2.08 | 0.419 | -- | 24.25 | 3960 | -- | -- |
| 430.88 | 0.973 | 3.2 | 0.528 | 0.0236 | -- | 0.826 | -- | 0.0214 | 16.8 | -- | -- | -- | -- |
| 432.51 | 0.974 | 3.2 | 0.532 | 0.0544 | -- | -- | -- | 0.0258 | 12.7 | -- | -- | -- | -- |
| 376.89 | 0.904 | 3.1 | 1.24 | -- | 1.69 | -- | -- | 0.473 | -- | 27.26 | 2563 | -- | -- |
| 406.15 | 0.939 | 3.17 | -- | 0.032 | 1.32 | -- | -- | 0.164 | 12.8 | 34.54 | 1662 | -- | -- |
| 432.7 | 0.972 | 3.2 | 0.53 | -- | -- | -- | -- | 0.0248 | -- | -- | -- | -- | -- |
| 439.98 | 0.981 | 3.21 | -- | 0.0466 | -- | -- | -- | -0.0335 | 12.2 | -- | -- | -- | -- |
| 406.19 | 0.939 | 3.17 | -- | -- | 1.33 | -- | -- | 0.163 | -- | 42.88 | 1662 | -- | -- |
| 440.12 | 0.979 | 3.21 | -- | -- | -- | -- | -- | -0.034 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 361.76 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 8 | 367.10 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 3 | 12 |
| 9 | 367.41 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 14 | 368.04 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 17 | 368.16 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 18 | 368.17 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 19 | 368.23 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 23 | 3 |
| 22 | 368.30 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 22 | 6 |
| 27 | 368.41 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 22 | 6 |
| 37 | 368.47 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 23 | 3 |
| 46 | 368.57 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 47 | 368.58 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 1 | 3 |
| 76 | 368.79 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 3 | 20 |
| 210 | 369.80 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 223 | 369.93 | temperature | 20.0 | 720 | > th | dose dependent | sin | 4 | NA |
| 225 | 369.94 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 273 | 370.26 | temperature | 25.0 | 4320 | < th | dose dependent | sin | 13 | NA |
| 323 | 370.62 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 330 | 370.66 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 385 | 371.04 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 394 | 371.10 | temperature | 10.0 | 4320 | > th | dose dependent | sin | 11 | NA |
| 579 | 372.26 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 633 | 372.56 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 656 | 372.71 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 3 |
| 661 | 372.73 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 3 |
| 662 | 372.73 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 3 |
| 768 | 373.27 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 15 | 4 |
| 770 | 373.27 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 15 | 7 |
| 776 | 373.29 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 15 | 13 |
| 783 | 373.31 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 15 | 11 |
| 842 | 373.50 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 990 | 373.95 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 8 | 21 |
| 997 | 373.97 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 8 | 11 |
| 999 | 373.97 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 8 | 14 |