Os03g0269300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Acid phosphatase/vanadium-dependent haloperoxidase family protein.
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Os03g0269300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Acid phosphatase/vanadium-dependent haloperoxidase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 139.2 | 0.554 | 3.14 | -0.4 | 0.383 | -0.764 | -1.06 | 2.88 | 0.0344 | 10.5 | 25.7 | 12 | -- | -- |
| 141.93 | 0.559 | 3.18 | -0.706 | 0.358 | -0.49 | -0.919 | -- | -0.0436 | 9.92 | 25.7 | 12 | -- | -- |
| 143.6 | 0.562 | 3.16 | -0.531 | 0.392 | -0.729 | -- | 1.96 | 0.00922 | 10.8 | 25.7 | 12 | -- | -- |
| 144.9 | 0.561 | 3.18 | -0.727 | 0.372 | -0.57 | -- | -- | -0.0376 | 10.7 | 25.6 | 9 | -- | -- |
| 147.69 | 0.566 | 3.15 | -0.544 | -- | -0.488 | -- | 1.42 | 0.081 | -- | 19.3 | 583 | -- | -- |
| 146.29 | 0.567 | 3.19 | -0.776 | 0.326 | -- | -1.02 | -- | -0.0684 | 8.71 | -- | -- | -- | -- |
| 149.72 | 0.573 | 3.19 | -0.81 | 0.331 | -- | -- | -- | -0.0691 | 8.48 | -- | -- | -- | -- |
| 149.22 | 0.569 | 3.17 | -0.656 | -- | -0.659 | -- | -- | 0.0308 | -- | 11.86 | 583 | -- | -- |
| 158.33 | 0.586 | 3.16 | -- | 0.416 | -0.755 | -- | -- | 0.057 | 11.4 | 25.62 | 13 | -- | -- |
| 155.85 | 0.583 | 3.2 | -0.809 | -- | -- | -- | -- | -0.0659 | -- | -- | -- | -- | -- |
| 167.02 | 0.605 | 3.17 | -- | 0.328 | -- | -- | -- | 0.0211 | 8.66 | -- | -- | -- | -- |
| 159.55 | 0.588 | 3.15 | -- | -- | -0.892 | -- | -- | 0.132 | -- | 14.68 | 620 | -- | -- |
| 173.11 | 0.614 | 3.18 | -- | -- | -- | -- | -- | 0.0238 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 131.48 | radiation | 10 | 90 | > th | dose dependent | rect. | 6 | 1 |
| 15 | 132.15 | humidity | 90 | 10 | < th | dose dependent | rect. | 1 | 7 |
| 31 | 132.43 | humidity | 90 | 10 | < th | dose dependent | rect. | 22 | 10 |
| 47 | 132.48 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 7 | 1 |
| 50 | 132.55 | humidity | 90 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 76 | 132.82 | radiation | 30 | 1440 | < th | dose independent | rect. | 24 | 7 |
| 77 | 132.83 | humidity | 90 | 30 | < th | dose dependent | rect. | 5 | 3 |
| 80 | 132.91 | radiation | 10 | 30 | > th | dose independent | rect. | 7 | 1 |
| 95 | 132.97 | temperature | 25 | 270 | < th | dose independent | rect. | 4 | 7 |
| 102 | 133.05 | temperature | 25 | 90 | < th | dose independent | rect. | 6 | 6 |
| 104 | 133.17 | humidity | 70 | 90 | < th | dose independent | rect. | 6 | 3 |
| 117 | 133.21 | humidity | 70 | 90 | < th | dose independent | rect. | 18 | 15 |
| 118 | 133.22 | radiation | 1 | 30 | > th | dose dependent | sin | 10 | NA |
| 137 | 133.40 | humidity | 80 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 165 | 133.50 | radiation | 10 | 30 | < th | dose independent | sin | 7 | NA |
| 172 | 133.55 | radiation | 30 | 90 | > th | dose dependent | rect. | 7 | 1 |
| 217 | 133.76 | radiation | 30 | 90 | > th | dose independent | rect. | 7 | 1 |
| 235 | 133.82 | radiation | 30 | 30 | < th | dose dependent | sin | 9 | NA |
| 263 | 134.03 | temperature | 25 | 270 | < th | dose dependent | rect. | 4 | 5 |
| 271 | 134.08 | humidity | 70 | 10 | < th | dose independent | rect. | 18 | 14 |
| 283 | 134.13 | humidity | 70 | 90 | < th | dose dependent | rect. | 18 | 15 |
| 300 | 134.20 | humidity | 70 | 4320 | < th | dose independent | rect. | 20 | 11 |
| 302 | 134.21 | humidity | 70 | 4320 | < th | dose dependent | rect. | 20 | 11 |
| 325 | 134.29 | humidity | 70 | 1440 | > th | dose independent | rect. | 24 | 7 |
| 331 | 134.29 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 7 |
| 347 | 134.33 | radiation | 10 | 30 | < th | dose independent | rect. | 23 | 13 |
| 364 | 134.44 | radiation | 30 | 10 | > th | dose dependent | rect. | 7 | 1 |
| 413 | 134.48 | humidity | 70 | 10 | < th | dose independent | rect. | 7 | 1 |
| 538 | 134.50 | humidity | 70 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 553 | 134.51 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 568 | 134.52 | humidity | 70 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 643 | 134.56 | radiation | 10 | 30 | < th | dose independent | rect. | 23 | 11 |
| 648 | 134.58 | radiation | 10 | 90 | < th | dose dependent | sin | 8 | NA |
| 668 | 134.60 | humidity | 80 | 720 | < th | dose dependent | rect. | 21 | 10 |
| 697 | 134.71 | radiation | 10 | 90 | < th | dose dependent | rect. | 23 | 11 |
| 701 | 134.73 | wind | 7 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 736 | 134.76 | humidity | 70 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 738 | 134.77 | humidity | 70 | 1440 | > th | dose independent | rect. | 2 | 5 |
| 750 | 134.77 | humidity | 80 | 720 | < th | dose dependent | rect. | 20 | 12 |
| 775 | 134.82 | humidity | 70 | 1440 | > th | dose independent | rect. | 22 | 9 |
| 799 | 134.97 | humidity | 80 | 720 | < th | dose dependent | rect. | 23 | 8 |
| 805 | 135.00 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 1 |
| 837 | 135.10 | humidity | 80 | 720 | < th | dose independent | rect. | 23 | 8 |
| 858 | 135.21 | radiation | 10 | 90 | < th | dose dependent | rect. | 23 | 14 |