Os03g0268600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein phosphatase type 2C.
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Os03g0268600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protein phosphatase type 2C.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 257.32 | 0.754 | 11.1 | -0.92 | 1.72 | -2.11 | 1.83 | -0.608 | 0.0876 | 7.42 | 83 | 675 | -- | -- |
| 257.28 | 0.747 | 11.1 | -0.944 | 1.75 | -2.08 | 1.6 | -- | 0.0931 | 7.24 | 83 | 641 | -- | -- |
| 263.36 | 0.756 | 11.1 | -0.938 | 1.77 | -2.11 | -- | 0.337 | 0.0846 | 7.37 | 83.6 | 643 | -- | -- |
| 263.68 | 0.756 | 11.1 | -0.912 | 1.77 | -2.11 | -- | -- | 0.0867 | 7.36 | 83.16 | 643 | -- | -- |
| 284.15 | 0.785 | 11.2 | -1.33 | -- | -1.76 | -- | 0.298 | -0.0177 | -- | 74 | 1363 | -- | -- |
| 366.47 | 0.897 | 11.1 | -1.02 | 0.439 | -- | 1.92 | -- | 0.196 | 5.89 | -- | -- | -- | -- |
| 375.51 | 0.907 | 11.1 | -1.01 | 0.451 | -- | -- | -- | 0.188 | 6.06 | -- | -- | -- | -- |
| 283.07 | 0.784 | 11.2 | -1.06 | -- | -2.31 | -- | -- | -0.0231 | -- | 76 | 1367 | -- | -- |
| 285.59 | 0.787 | 11.1 | -- | 1.82 | -2.13 | -- | -- | 0.191 | 7.23 | 83.44 | 616 | -- | -- |
| 386.03 | 0.918 | 11.1 | -0.995 | -- | -- | -- | -- | 0.198 | -- | -- | -- | -- | -- |
| 402.27 | 0.938 | 11.1 | -- | 0.436 | -- | -- | -- | 0.3 | 6.18 | -- | -- | -- | -- |
| 313.08 | 0.824 | 11.1 | -- | -- | -2.47 | -- | -- | 0.109 | -- | 84.94 | 1318 | -- | -- |
| 412.13 | 0.948 | 11.1 | -- | -- | -- | -- | -- | 0.309 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 250.52 | humidity | 70 | 720 | > th | dose dependent | rect. | 10 | 15 |
| 5 | 251.90 | humidity | 70 | 720 | > th | dose dependent | sin | 18 | NA |
| 8 | 252.34 | humidity | 80 | 720 | > th | dose independent | sin | 20 | NA |
| 15 | 253.55 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 11 |
| 22 | 254.64 | humidity | 80 | 720 | > th | dose independent | rect. | 6 | 16 |
| 29 | 255.19 | humidity | 70 | 720 | > th | dose dependent | rect. | 5 | 19 |
| 93 | 258.71 | humidity | 80 | 720 | < th | dose independent | sin | 20 | NA |
| 97 | 258.89 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 10 |
| 116 | 259.65 | humidity | 80 | 720 | < th | dose independent | rect. | 9 | 12 |
| 170 | 261.79 | humidity | 80 | 720 | < th | dose independent | rect. | 6 | 16 |
| 181 | 262.19 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 11 |
| 237 | 263.44 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 11 |
| 274 | 264.29 | humidity | 80 | 1440 | < th | dose independent | sin | 1 | NA |
| 277 | 264.33 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 21 |
| 287 | 264.50 | humidity | 80 | 1440 | > th | dose independent | rect. | 2 | 15 |
| 346 | 265.40 | humidity | 80 | 1440 | > th | dose independent | sin | 1 | NA |
| 400 | 266.13 | humidity | 80 | 720 | > th | dose independent | rect. | 23 | 23 |
| 431 | 266.62 | humidity | 80 | 720 | > th | dose independent | rect. | 1 | 21 |
| 449 | 266.96 | humidity | 80 | 720 | > th | dose independent | rect. | 1 | 23 |
| 545 | 268.32 | humidity | 80 | 720 | > th | dose dependent | rect. | 19 | 2 |
| 554 | 268.45 | humidity | 80 | 720 | > th | dose independent | no | NA | NA |
| 592 | 269.09 | humidity | 70 | 720 | > th | dose dependent | no | NA | NA |
| 700 | 270.71 | humidity | 80 | 720 | < th | dose independent | rect. | 9 | 23 |
| 742 | 271.23 | humidity | 80 | 720 | > th | dose independent | rect. | 21 | 23 |
| 773 | 271.56 | humidity | 70 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 785 | 271.70 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 23 |
| 828 | 272.53 | humidity | 80 | 720 | < th | dose independent | no | NA | NA |
| 840 | 272.70 | humidity | 80 | 720 | > th | dose independent | rect. | 17 | 23 |
| 953 | 274.54 | humidity | 80 | 720 | < th | dose independent | rect. | 13 | 23 |
| 973 | 274.99 | humidity | 80 | 720 | < th | dose independent | rect. | 15 | 23 |