Os03g0268200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os03g0268200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.15 | 0.245 | 10.5 | 0.609 | 0.118 | -0.699 | 0.519 | 0.9 | 0.234 | 1.3 | 20.09 | 3526 | -- | -- |
| 27.62 | 0.245 | 10.5 | 0.416 | 0.133 | -0.769 | 0.556 | -- | 0.18 | 1.85 | 16.53 | 3736 | -- | -- |
| 27.95 | 0.246 | 10.5 | 0.591 | 0.129 | -0.687 | -- | 0.929 | 0.23 | 3.6 | 20.08 | 3383 | -- | -- |
| 28.44 | 0.248 | 10.5 | 0.399 | 0.16 | -0.79 | -- | -- | 0.173 | 3.47 | 15.67 | 3745 | -- | -- |
| 28.98 | 0.251 | 10.5 | 0.59 | -- | -0.673 | -- | 0.922 | 0.234 | -- | 19.97 | 3335 | -- | -- |
| 39.07 | 0.293 | 10.6 | 0.0851 | 0.0293 | -- | 0.564 | -- | 0.0243 | 23.8 | -- | -- | -- | -- |
| 39.68 | 0.295 | 10.6 | 0.0588 | 0.124 | -- | -- | -- | 0.019 | 5.04 | -- | -- | -- | -- |
| 29.48 | 0.253 | 10.5 | 0.384 | -- | -0.772 | -- | -- | 0.175 | -- | 15.3 | 3319 | -- | -- |
| 30.83 | 0.259 | 10.5 | -- | 0.147 | -0.489 | -- | -- | 0.101 | 4.08 | 22.32 | 3143 | -- | -- |
| 40.49 | 0.297 | 10.6 | 0.0633 | -- | -- | -- | -- | 0.0222 | -- | -- | -- | -- | -- |
| 39.77 | 0.295 | 10.6 | -- | 0.125 | -- | -- | -- | 0.0124 | 5.02 | -- | -- | -- | -- |
| 31.73 | 0.262 | 10.5 | -- | -- | -0.507 | -- | -- | 0.105 | -- | 21.9 | 1857 | -- | -- |
| 40.6 | 0.297 | 10.6 | -- | -- | -- | -- | -- | 0.0151 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.94 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 9 |
| 6 | 25.03 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 5 |
| 7 | 25.04 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 5 |
| 17 | 25.23 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 8 |
| 21 | 25.33 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 23 | 25.37 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 29 | 25.44 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 33 | 25.50 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 5 |
| 34 | 25.50 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 9 |
| 38 | 25.55 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 9 |
| 46 | 25.57 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 6 |
| 49 | 25.58 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 58 | 25.62 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 5 | 11 |
| 61 | 25.64 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 64 | 25.65 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 5 | 11 |
| 76 | 25.72 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 10 | 6 |
| 80 | 25.73 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 11 | 4 |
| 98 | 25.76 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 13 | 9 |
| 108 | 25.80 | atmosphere | 995.0 | 43200 | > th | dose independent | sin | 0 | NA |
| 109 | 25.80 | atmosphere | 995.0 | 43200 | < th | dose independent | sin | 0 | NA |
| 156 | 25.90 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 5 | 16 |
| 157 | 25.90 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 5 | 17 |
| 184 | 25.93 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 8 | 15 |
| 190 | 25.93 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 4 |
| 243 | 26.04 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 317 | 26.17 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 331 | 26.21 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 332 | 26.21 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 339 | 26.21 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 356 | 26.25 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 2 |
| 361 | 26.27 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 379 | 26.32 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 435 | 26.53 | atmosphere | 1000.0 | 43200 | < th | dose dependent | sin | 23 | NA |
| 462 | 26.59 | wind | 5.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 467 | 26.60 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 7 | 3 |
| 474 | 26.63 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 487 | 26.66 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 489 | 26.66 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 498 | 26.66 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 7 | 3 |
| 543 | 26.73 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 546 | 26.74 | wind | 5.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 577 | 26.77 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 595 | 26.79 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 14 |
| 611 | 26.81 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 649 | 26.85 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 679 | 26.89 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 710 | 26.92 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 16 | 3 |
| 724 | 26.93 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 735 | 26.93 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 822 | 27.00 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 878 | 27.05 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 24 | 6 |
| 885 | 27.06 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 898 | 27.07 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 934 | 27.08 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 950 | 27.09 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 20 | 17 |
| 994 | 27.12 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 20 | 17 |