Os03g0268000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein phosphatase 1, catalytic gsmms subunit.
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Os03g0268000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protein phosphatase 1, catalytic gsmms subunit.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.35 | 0.201 | 10.9 | 0.442 | 1.02 | 0.245 | -0.355 | 2.21 | 0.225 | 5.48 | 9.134 | 4145 | -- | -- |
| 21.93 | 0.218 | 11 | 0.0298 | 1.03 | 0.219 | -0.17 | -- | 0.172 | 5.27 | 29.67 | 4376 | -- | -- |
| 18.49 | 0.2 | 10.9 | 0.45 | 1.03 | 0.231 | -- | 2.27 | 0.225 | 5.48 | 9.586 | 3458 | -- | -- |
| 21.72 | 0.217 | 11 | -0.0341 | 1.01 | 0.23 | -- | -- | 0.163 | 5.42 | 29.85 | 4144 | -- | -- |
| 69.42 | 0.39 | 11 | 0.347 | -- | -0.768 | -- | 1.26 | 0.291 | -- | 9.586 | 3458 | -- | -- |
| 23.39 | 0.227 | 11 | 0.00414 | 1.03 | -- | -0.246 | -- | 0.118 | 5.42 | -- | -- | -- | -- |
| 23.54 | 0.227 | 11 | 0.00347 | 1.03 | -- | -- | -- | 0.119 | 5.42 | -- | -- | -- | -- |
| 70.77 | 0.394 | 11 | 0.173 | -- | -0.743 | -- | -- | 0.243 | -- | 9.586 | 3458 | -- | -- |
| 21.75 | 0.217 | 11 | -- | 1.01 | 0.217 | -- | -- | 0.161 | 5.47 | 29.8 | 4382 | -- | -- |
| 78.75 | 0.415 | 11 | 0.0381 | -- | -- | -- | -- | 0.144 | -- | -- | -- | -- | -- |
| 23.54 | 0.227 | 11 | -- | 1.03 | -- | -- | -- | 0.119 | 5.42 | -- | -- | -- | -- |
| 71.52 | 0.395 | 11 | -- | -- | -0.689 | -- | -- | 0.218 | -- | 9.586 | 3458 | -- | -- |
| 78.79 | 0.414 | 11 | -- | -- | -- | -- | -- | 0.14 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.27 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 2 | 17.28 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 122 | 17.91 | temperature | 10 | 4320 | > th | dose dependent | sin | 12 | NA |
| 123 | 17.91 | temperature | 30 | 4320 | < th | dose dependent | sin | 12 | NA |
| 467 | 18.19 | temperature | 30 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 490 | 18.20 | temperature | 10 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 641 | 18.27 | wind | 1 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 938 | 18.34 | temperature | 10 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 941 | 18.34 | temperature | 25 | 43200 | < th | dose dependent | rect. | 3 | 1 |