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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0264300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor (EC 2.7.1.37) (BRI1-associated receptor kinase 1) (Somatic embryogenesis receptor-like kinase 3).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.86 (0.0463) R2 : 0.219
β1 : 0.723 (0.17) R2dD : 0.0325 R2D : 0.036
β2 : 0.834 (0.122) R2dC : 0.0817 R2C : 0.0637
β3 : 2.69 (0.466) R2dE : 0.0575 R2E : 0.0483
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 6.74 (1.21) R2dD*E : 0.0521 R2D*E : 0.0654
γ1 : 0.0959 (0.0989) R2dN8 : 0.00227 R2N8 : -0.00199
σ : 0.866
deviance : 345.5
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C
peak time of C : 17.9
E
wheather : atmosphere
threshold : 1007
memory length : 88
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 8.96
open length of G : 0.768

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
344.37 0.872 3.85 0.731 0.829 2.67 0.689 6.86 0.0965 18 1007 89 8.95 0.783
368.01 0.893 3.85 0.82 0.832 2.92 0.19 -- 0.119 17.9 1007 85 8.99 0.767
345.5 0.866 3.86 0.723 0.834 2.69 -- 6.74 0.0959 17.9 1007 88 8.96 0.768
368.1 0.894 3.85 0.824 0.831 2.92 -- -- 0.12 17.9 1007 86 8.98 0.767
380.58 0.909 3.83 0.7 -- 2.47 -- 6.74 0.097 -- 1007 86 9.07 0.6
394.57 0.931 3.85 0.82 0.767 -- 0.264 -- 0.108 17.2 -- -- -- --
394.74 0.93 3.85 0.82 0.769 -- -- -- 0.109 17.3 -- -- -- --
403.29 0.935 3.83 0.804 -- 2.72 -- -- 0.107 -- 1007 83 9.03 0.741
385.82 0.915 3.87 -- 0.799 2.92 -- -- 0.0387 17.9 1007 85 9.01 0.75
425.62 0.964 3.84 0.793 -- -- -- -- 0.09 -- -- -- -- --
412.46 0.95 3.87 -- 0.755 -- -- -- 0.018 17.3 -- -- -- --
420.06 0.955 3.86 -- -- 2.66 -- -- 0.0195 -- 1007 80 9.02 0.85
442.22 0.982 3.86 -- -- -- -- -- 0.00205 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 348.51 atmosphere 1005.0 90 > th dose dependent rect. 9 1
11 354.43 atmosphere 1010.0 90 > th dose independent rect. 8 1
12 354.43 atmosphere 1010.0 10 > th dose independent rect. 9 1
73 356.75 temperature 25.0 90 < th dose independent rect. 8 1
92 363.76 atmosphere 1005.0 270 > th dose dependent rect. 6 1
94 364.17 atmosphere 1005.0 90 > th dose dependent rect. 3 7
95 364.38 humidity 50.0 720 > th dose independent rect. 14 20
169 368.17 atmosphere 995.0 90 > th dose dependent rect. 24 10
191 369.45 temperature 30.0 90 < th dose independent rect. 23 11
206 369.72 temperature 30.0 10 < th dose independent rect. 24 11
217 370.29 wind 9.0 43200 > th dose dependent rect. 15 18
221 370.47 humidity 60.0 720 < th dose independent rect. 17 21
226 370.69 humidity 60.0 720 < th dose independent rect. 11 2
227 370.82 wind 9.0 43200 > th dose dependent rect. 15 23
258 371.42 wind 9.0 43200 > th dose dependent rect. 13 21
267 371.78 humidity 60.0 720 < th dose independent rect. 10 4
269 371.86 temperature 30.0 90 < th dose dependent rect. 8 2
285 371.97 radiation 10.0 270 < th dose dependent rect. 6 1
288 372.00 wind 9.0 43200 > th dose dependent rect. 6 13
289 372.00 wind 9.0 43200 > th dose dependent rect. 6 16
294 372.10 wind 9.0 43200 > th dose dependent rect. 6 18
295 372.11 wind 9.0 43200 > th dose dependent rect. 6 21
323 372.30 wind 9.0 43200 > th dose independent rect. 15 19
326 372.31 humidity 60.0 720 < th dose dependent rect. 14 22
339 372.39 wind 9.0 43200 > th dose dependent rect. 1 21
343 372.40 wind 9.0 43200 > th dose dependent rect. 20 23
344 372.40 wind 9.0 43200 > th dose dependent rect. 23 23
357 372.47 humidity 60.0 720 > th dose independent rect. 6 12
363 372.49 humidity 70.0 14400 > th dose dependent rect. 1 4
364 372.50 humidity 50.0 14400 > th dose dependent rect. 24 5
376 372.53 wind 9.0 43200 > th dose dependent no NA NA
396 372.62 temperature 10.0 30 > th dose dependent rect. 24 10
398 372.63 atmosphere 995.0 90 > th dose dependent rect. 10 14
413 372.75 humidity 60.0 720 > th dose independent rect. 5 14
416 372.76 wind 7.0 10 < th dose independent rect. 24 10
426 372.80 wind 9.0 43200 > th dose dependent rect. 18 23
430 372.89 wind 3.0 14400 < th dose dependent rect. 9 1
444 373.02 temperature 15.0 90 > th dose independent rect. 23 11
447 373.04 wind 9.0 43200 > th dose dependent sin 23 NA
457 373.12 wind 9.0 30 < th dose independent rect. 10 14
472 373.22 temperature 30.0 10 < th dose independent rect. 8 2
477 373.25 temperature 10.0 1440 > th dose independent rect. 1 10
481 373.25 atmosphere 995.0 1440 > th dose independent rect. 1 10
482 373.25 atmosphere 1015.0 30 < th dose independent rect. 24 10
483 373.25 temperature 10.0 1440 > th dose independent rect. 11 14
498 373.32 humidity 50.0 30 > th dose independent rect. 24 10
499 373.32 atmosphere 995.0 30 > th dose independent rect. 24 10
500 373.32 temperature 10.0 30 > th dose independent rect. 10 14
539 373.60 atmosphere 995.0 30 > th dose independent rect. 10 14
559 373.65 humidity 60.0 720 > th dose independent rect. 4 23
562 373.69 humidity 60.0 720 < th dose dependent rect. 10 23
567 373.72 humidity 60.0 720 < th dose dependent rect. 10 10
601 373.73 humidity 60.0 720 < th dose dependent no NA NA
698 373.83 humidity 60.0 720 < th dose independent sin 2 NA
699 373.83 wind 9.0 43200 < th dose independent rect. 15 19
700 373.83 humidity 50.0 720 > th dose independent rect. 22 19
753 373.99 precipitation 0.1 90 < th dose independent rect. 10 14
755 373.99 precipitation 0.1 90 < th dose dependent rect. 10 14
758 374.00 wind 3.0 90 < th dose dependent rect. 9 1
771 374.04 humidity 60.0 720 > th dose independent rect. 7 9
774 374.05 humidity 60.0 720 < th dose independent rect. 9 11
789 374.06 humidity 60.0 720 < th dose independent no NA NA
874 374.14 humidity 60.0 720 > th dose independent rect. 6 23
875 374.17 wind 9.0 43200 > th dose dependent rect. 20 18
877 374.18 humidity 60.0 720 > th dose independent rect. 22 23
900 374.22 temperature 30.0 90 < th dose independent rect. 14 20
910 374.29 humidity 60.0 720 < th dose dependent sin 23 NA
972 374.39 wind 9.0 43200 > th dose dependent rect. 8 6
985 374.45 wind 1.0 14400 < th dose independent rect. 8 2
987 374.46 atmosphere 1015.0 1440 > th dose dependent rect. 24 12
988 374.47 radiation 10.0 270 < th dose independent rect. 6 2
996 374.49 humidity 60.0 720 < th dose dependent rect. 11 2