Os03g0263800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os03g0263800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 9.24 | 0.143 | 12.6 | 0.165 | 0.61 | -1.02 | 0.21 | -1.62 | 0.136 | 4.75 | 19.43 | 5210 | -- | -- |
| 9.45 | 0.143 | 12.7 | 0.199 | 0.61 | -0.289 | 0.207 | -- | 0.118 | 4.74 | 23.73 | 3216 | -- | -- |
| 9.33 | 0.142 | 12.6 | 0.151 | 0.614 | -0.988 | -- | -1.54 | 0.129 | 4.68 | 19.82 | 6024 | -- | -- |
| 9.56 | 0.144 | 12.7 | 0.211 | 0.616 | -0.278 | -- | -- | 0.119 | 4.73 | 26.65 | 3208 | -- | -- |
| 28.98 | 0.251 | 12.6 | 0.162 | -- | -1.15 | -- | -1.84 | 0.149 | -- | 19.66 | 5469 | -- | -- |
| 10.77 | 0.154 | 12.6 | 0.329 | 0.617 | -- | 0.199 | -- | 0.187 | 4.7 | -- | -- | -- | -- |
| 10.88 | 0.154 | 12.6 | 0.328 | 0.618 | -- | -- | -- | 0.186 | 4.68 | -- | -- | -- | -- |
| 28.35 | 0.248 | 12.7 | 0.187 | -- | -0.375 | -- | -- | 0.104 | -- | 27.69 | 2699 | -- | -- |
| 9.61 | 0.144 | 12.7 | -- | 0.606 | -0.331 | -- | -- | 0.064 | 4.69 | 24.72 | 39432 | -- | -- |
| 31.14 | 0.261 | 12.6 | 0.352 | -- | -- | -- | -- | 0.202 | -- | -- | -- | -- | -- |
| 13.71 | 0.173 | 12.7 | -- | 0.624 | -- | -- | -- | 0.15 | 4.66 | -- | -- | -- | -- |
| 29.12 | 0.251 | 12.7 | -- | -- | -0.472 | -- | -- | 0.0621 | -- | 27.22 | 2705 | -- | -- |
| 34.4 | 0.274 | 12.7 | -- | -- | -- | -- | -- | 0.163 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 8.76 | temperature | 30 | 10 | < th | dose dependent | rect. | 22 | 6 |
| 4 | 8.84 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 8 |
| 6 | 8.85 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 15 |
| 7 | 8.86 | temperature | 10 | 10 | > th | dose dependent | sin | 11 | NA |
| 44 | 8.97 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 3 |
| 47 | 8.99 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 1 |
| 76 | 9.05 | temperature | 30 | 10 | < th | dose dependent | sin | 11 | NA |
| 82 | 9.06 | humidity | 70 | 43200 | < th | dose dependent | rect. | 3 | 6 |
| 86 | 9.06 | radiation | 30 | 30 | < th | dose dependent | rect. | 4 | 18 |
| 90 | 9.08 | temperature | 25 | 10 | < th | dose independent | rect. | 23 | 5 |
| 100 | 9.09 | humidity | 70 | 43200 | < th | dose independent | rect. | 24 | 9 |
| 103 | 9.09 | radiation | 20 | 30 | < th | dose independent | rect. | 4 | 18 |
| 110 | 9.09 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 16 |
| 111 | 9.09 | temperature | 25 | 10 | < th | dose dependent | rect. | 10 | 18 |
| 131 | 9.11 | humidity | 60 | 43200 | > th | dose independent | rect. | 4 | 5 |
| 139 | 9.11 | humidity | 70 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 144 | 9.11 | temperature | 25 | 10 | < th | dose dependent | rect. | 16 | 12 |
| 231 | 9.14 | humidity | 60 | 43200 | < th | dose dependent | rect. | 20 | 16 |
| 244 | 9.15 | humidity | 50 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 249 | 9.15 | humidity | 60 | 43200 | < th | dose dependent | rect. | 3 | 9 |
| 262 | 9.16 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 1 |
| 269 | 9.16 | temperature | 25 | 10 | > th | dose independent | rect. | 16 | 16 |
| 277 | 9.16 | humidity | 60 | 43200 | < th | dose dependent | sin | 8 | NA |
| 306 | 9.17 | temperature | 25 | 270 | < th | dose independent | rect. | 20 | 6 |
| 316 | 9.17 | humidity | 60 | 43200 | < th | dose dependent | rect. | 6 | 6 |
| 343 | 9.17 | temperature | 15 | 10 | > th | dose dependent | rect. | 16 | 16 |
| 349 | 9.18 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 351 | 9.18 | temperature | 25 | 270 | < th | dose independent | rect. | 22 | 3 |
| 362 | 9.18 | temperature | 20 | 4320 | < th | dose dependent | rect. | 4 | 2 |
| 404 | 9.19 | temperature | 15 | 10 | > th | dose dependent | rect. | 18 | 14 |
| 410 | 9.20 | humidity | 50 | 43200 | > th | dose independent | sin | 7 | NA |
| 414 | 9.20 | humidity | 50 | 43200 | > th | dose independent | rect. | 19 | 20 |
| 443 | 9.21 | humidity | 50 | 43200 | > th | dose independent | rect. | 4 | 11 |
| 449 | 9.21 | radiation | 10 | 10 | < th | dose independent | rect. | 7 | 15 |
| 461 | 9.21 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 463 | 9.21 | wind | 1 | 14400 | < th | dose dependent | rect. | 23 | 3 |
| 499 | 9.22 | humidity | 50 | 43200 | < th | dose independent | sin | 7 | NA |
| 511 | 9.22 | humidity | 50 | 43200 | > th | dose independent | rect. | 19 | 17 |
| 518 | 9.22 | humidity | 50 | 43200 | < th | dose independent | rect. | 19 | 20 |
| 548 | 9.23 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 550 | 9.23 | humidity | 50 | 43200 | > th | dose independent | rect. | 7 | 8 |
| 554 | 9.23 | humidity | 50 | 43200 | < th | dose independent | rect. | 4 | 11 |
| 596 | 9.24 | humidity | 50 | 43200 | < th | dose independent | sin | 4 | NA |
| 598 | 9.24 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 599 | 9.24 | humidity | 50 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 600 | 9.24 | humidity | 50 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 605 | 9.24 | humidity | 50 | 43200 | > th | dose independent | rect. | 10 | 5 |
| 617 | 9.24 | humidity | 50 | 43200 | < th | dose independent | rect. | 6 | 9 |
| 700 | 9.25 | humidity | 80 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 704 | 9.25 | humidity | 50 | 43200 | < th | dose independent | rect. | 8 | 7 |
| 737 | 9.25 | humidity | 50 | 43200 | < th | dose dependent | sin | 2 | NA |
| 783 | 9.25 | humidity | 50 | 43200 | < th | dose dependent | rect. | 13 | 20 |
| 790 | 9.26 | humidity | 50 | 43200 | > th | dose independent | no | NA | NA |
| 792 | 9.26 | humidity | 50 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 793 | 9.26 | humidity | 80 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 794 | 9.26 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 795 | 9.26 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 808 | 9.26 | humidity | 50 | 43200 | < th | dose independent | rect. | 10 | 5 |
| 809 | 9.26 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 18 | 5 |
| 831 | 9.26 | humidity | 50 | 43200 | > th | dose independent | rect. | 4 | 18 |
| 844 | 9.26 | humidity | 50 | 43200 | > th | dose independent | rect. | 10 | 21 |
| 866 | 9.26 | humidity | 50 | 43200 | < th | dose dependent | sin | 23 | NA |
| 870 | 9.26 | humidity | 50 | 43200 | < th | dose dependent | no | NA | NA |
| 895 | 9.26 | humidity | 50 | 43200 | < th | dose dependent | rect. | 13 | 17 |
| 896 | 9.26 | humidity | 50 | 43200 | < th | dose dependent | rect. | 3 | 18 |
| 927 | 9.27 | temperature | 25 | 10 | > th | dose independent | sin | 12 | NA |
| 932 | 9.27 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 1 |