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Os03g0263700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13 (0.0186) R2 : 0.0727
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.234 (0.0392) R2dN8 : 0.0939 R2N8 : 0.0727
σ : 0.351
deviance : 56.44
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
36.57 0.284 13 0.305 0.289 0.359 0.174 0.627 0.244 5.75 1.68 75 -- --
38.19 0.288 12.9 0.305 0.243 0.272 0.641 -- 0.28 8.39 0.96 48 -- --
36.62 0.282 13 0.305 0.286 0.348 -- 0.633 0.246 5.89 1.881 72 -- --
38.88 0.29 13 0.304 0.265 0.352 -- -- 0.247 5.79 1.63 64 -- --
40.24 0.295 13 0.276 -- 0.329 -- 0.631 0.27 -- 1.824 44 -- --
39.33 0.294 12.9 0.284 0.464 -- 0.676 -- 0.267 10.1 -- -- -- --
41.12 0.3 12.9 0.31 0.463 -- -- -- 0.268 9.96 -- -- -- --
41.78 0.301 13 0.284 -- 0.337 -- -- 0.27 -- 0.1686 39 -- --
41.23 0.299 13 -- 0.249 0.328 -- -- 0.249 5.78 0.4798 50 -- --
53.99 0.343 13 0.305 -- -- -- -- 0.268 -- -- -- -- --
43.65 0.309 12.9 -- 0.462 -- -- -- 0.234 9.91 -- -- -- --
43.94 0.309 13 -- -- 0.329 -- -- 0.258 -- 0.1402 39 -- --
56.44 0.351 13 -- -- -- -- -- 0.234 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 34.08 wind 5.0 720 < th dose independent rect. 17 2
2 34.16 wind 5.0 90 < th dose independent rect. 15 14
3 34.25 wind 5.0 90 < th dose independent rect. 17 12
4 34.37 wind 9.0 720 < th dose dependent rect. 17 2
5 34.44 wind 9.0 90 < th dose dependent rect. 15 14
7 34.52 wind 7.0 90 < th dose dependent rect. 17 12
14 34.63 temperature 20.0 720 > th dose independent rect. 18 1
15 34.64 radiation 1.0 90 > th dose independent sin 6 NA
26 34.87 radiation 1.0 90 < th dose dependent sin 4 NA
29 34.89 wind 7.0 720 < th dose independent rect. 7 22
33 34.96 radiation 1.0 90 < th dose independent sin 6 NA
39 35.05 temperature 15.0 90 > th dose dependent rect. 5 6
55 35.17 wind 7.0 720 < th dose independent rect. 17 18
56 35.18 temperature 25.0 10 > th dose independent rect. 6 5
57 35.18 temperature 20.0 270 > th dose dependent rect. 5 3
59 35.19 radiation 1.0 90 < th dose dependent rect. 21 23
66 35.26 radiation 1.0 90 > th dose independent rect. 5 6
78 35.28 temperature 20.0 720 > th dose independent rect. 9 10
82 35.29 wind 5.0 90 < th dose independent rect. 11 18
85 35.33 temperature 20.0 4320 > th dose independent rect. 20 2
86 35.33 radiation 1.0 270 > th dose independent rect. 5 2
88 35.35 temperature 30.0 10 < th dose independent rect. 11 19
89 35.35 radiation 1.0 90 < th dose independent rect. 21 23
104 35.38 temperature 20.0 4320 < th dose independent rect. 20 2
106 35.38 wind 9.0 10 < th dose dependent rect. 18 12
109 35.39 wind 7.0 720 < th dose independent rect. 7 13
114 35.40 wind 9.0 90 < th dose dependent rect. 11 18
117 35.42 atmosphere 1000.0 90 > th dose dependent rect. 3 2
118 35.43 atmosphere 1005.0 14400 > th dose independent rect. 15 11
125 35.44 humidity 90.0 30 < th dose independent rect. 6 5
127 35.44 atmosphere 1005.0 14400 > th dose independent rect. 16 8
157 35.47 wind 7.0 720 < th dose independent rect. 8 11
172 35.49 atmosphere 1005.0 14400 > th dose independent sin 16 NA
175 35.49 temperature 20.0 720 > th dose independent rect. 11 9
178 35.49 atmosphere 1005.0 14400 < th dose independent rect. 14 12
184 35.49 temperature 15.0 90 > th dose independent rect. 5 22
190 35.50 wind 9.0 720 < th dose independent rect. 2 17
192 35.50 radiation 1.0 90 < th dose dependent rect. 23 20
194 35.51 humidity 80.0 90 > th dose independent rect. 3 2
234 35.54 temperature 20.0 270 > th dose independent rect. 5 2
235 35.54 humidity 90.0 14400 > th dose independent rect. 5 2
253 35.55 radiation 1.0 90 < th dose dependent rect. 3 7
263 35.56 radiation 1.0 90 < th dose dependent rect. 3 5
266 35.56 radiation 1.0 90 < th dose dependent rect. 3 13
267 35.57 atmosphere 1005.0 14400 < th dose independent sin 16 NA
302 35.60 atmosphere 1005.0 14400 < th dose independent rect. 14 3
313 35.61 atmosphere 1005.0 90 > th dose independent rect. 3 2
328 35.62 humidity 90.0 14400 > th dose independent rect. 3 5
347 35.62 radiation 1.0 90 < th dose dependent rect. 2 17
388 35.65 atmosphere 995.0 90 > th dose independent rect. 11 18
400 35.66 temperature 15.0 10 > th dose independent rect. 20 15
401 35.66 humidity 90.0 30 < th dose independent rect. 20 15
431 35.68 wind 9.0 43200 > th dose independent rect. 16 4
463 35.70 humidity 90.0 14400 < th dose independent rect. 5 2
464 35.70 atmosphere 1005.0 14400 > th dose independent rect. 13 4
467 35.70 precipitation 0.1 90 < th dose independent rect. 5 6
468 35.70 radiation 1.0 90 < th dose independent rect. 3 7
473 35.70 radiation 1.0 90 < th dose independent rect. 2 14
482 35.70 precipitation 0.1 90 < th dose dependent rect. 5 6
487 35.71 radiation 1.0 90 < th dose independent rect. 3 5
490 35.71 humidity 80.0 270 > th dose independent rect. 22 7
499 35.71 precipitation 0.1 90 < th dose independent rect. 11 18
506 35.71 precipitation 0.1 90 < th dose dependent rect. 11 18
511 35.72 radiation 30.0 10 < th dose independent rect. 6 5
513 35.72 wind 9.0 90 < th dose independent rect. 5 6
514 35.72 temperature 10.0 90 > th dose independent rect. 5 6
516 35.72 atmosphere 995.0 90 > th dose independent rect. 5 6
517 35.72 atmosphere 1015.0 90 < th dose independent rect. 5 6
528 35.72 temperature 10.0 90 > th dose independent rect. 11 18
537 35.72 humidity 50.0 10 > th dose dependent rect. 18 12
570 35.74 wind 1.0 30 > th dose independent rect. 11 9
584 35.75 wind 5.0 90 < th dose independent rect. 3 2
585 35.75 humidity 90.0 14400 < th dose independent rect. 3 5
588 35.75 humidity 50.0 90 > th dose independent rect. 5 6
606 35.76 wind 9.0 43200 < th dose independent rect. 16 4
622 35.76 radiation 1.0 90 < th dose independent rect. 23 20
640 35.77 atmosphere 1005.0 14400 > th dose independent rect. 21 7
656 35.78 wind 9.0 14400 < th dose independent rect. 7 3
672 35.78 atmosphere 1005.0 10 > th dose dependent rect. 3 3
673 35.78 wind 9.0 30 < th dose dependent rect. 6 5
674 35.79 precipitation 0.1 720 < th dose independent rect. 17 2
679 35.79 atmosphere 1005.0 14400 > th dose independent rect. 22 4
690 35.79 precipitation 0.1 720 < th dose dependent rect. 17 2
693 35.80 atmosphere 1005.0 14400 > th dose independent no NA NA
732 35.81 atmosphere 1005.0 14400 > th dose independent rect. 21 22
733 35.81 atmosphere 1005.0 14400 > th dose independent rect. 1 23
777 35.83 atmosphere 1005.0 14400 > th dose independent rect. 22 2
804 35.84 radiation 10.0 270 < th dose independent rect. 5 2
810 35.84 atmosphere 1005.0 14400 < th dose independent rect. 22 5
845 35.85 atmosphere 1005.0 14400 > th dose independent rect. 1 1
882 35.86 temperature 30.0 10 < th dose independent rect. 6 5
930 35.87 atmosphere 995.0 10 > th dose independent rect. 11 19
936 35.87 atmosphere 1005.0 14400 < th dose independent rect. 21 23
937 35.87 humidity 80.0 10 > th dose dependent sin 5 NA
941 35.88 atmosphere 1005.0 14400 < th dose independent no NA NA
963 35.88 atmosphere 1005.0 14400 < th dose independent rect. 3 23
968 35.88 temperature 10.0 90 > th dose dependent rect. 5 8
993 35.89 atmosphere 1005.0 14400 < th dose independent rect. 1 23