Os03g0262700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Harpin-induced 1 domain containing protein.
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Os03g0262700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Harpin-induced 1 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.17 | 0.275 | 10.2 | 1.35 | 0.372 | 0.583 | 0.983 | -0.618 | 0.154 | 4.17 | 28.95 | 343 | -- | -- |
| 34.25 | 0.273 | 10.2 | 1.27 | 0.355 | 0.537 | 0.887 | -- | 0.144 | 4.13 | 28.57 | 344 | -- | -- |
| 36.72 | 0.282 | 10.2 | 1.35 | 0.372 | 0.583 | -- | -0.108 | 0.154 | 4.17 | 28.95 | 343 | -- | -- |
| 35.98 | 0.279 | 10.2 | 1.28 | 0.37 | 0.514 | -- | -- | 0.137 | 5.13 | 28.41 | 273 | -- | -- |
| 39.88 | 0.294 | 10.2 | 1.3 | -- | 0.74 | -- | 0.17 | 0.191 | -- | 28.2 | 316 | -- | -- |
| 41.76 | 0.303 | 10.2 | 1.17 | 0.682 | -- | 1.04 | -- | 0.0853 | 4.67 | -- | -- | -- | -- |
| 44.49 | 0.312 | 10.2 | 1.16 | 0.693 | -- | -- | -- | 0.08 | 4.91 | -- | -- | -- | -- |
| 39.79 | 0.294 | 10.2 | 1.33 | -- | 0.724 | -- | -- | 0.19 | -- | 27.71 | 325 | -- | -- |
| 76.67 | 0.408 | 10.2 | -- | 0.519 | 0.347 | -- | -- | -0.0272 | 4.97 | 28.92 | 269 | -- | -- |
| 69.77 | 0.39 | 10.2 | 1.19 | -- | -- | -- | -- | 0.0979 | -- | -- | -- | -- | -- |
| 80.18 | 0.419 | 10.2 | -- | 0.714 | -- | -- | -- | -0.0496 | 4.86 | -- | -- | -- | -- |
| 85.49 | 0.431 | 10.2 | -- | -- | 0.659 | -- | -- | 0.0245 | -- | 28.43 | 325 | -- | -- |
| 107.07 | 0.483 | 10.2 | -- | -- | -- | -- | -- | -0.034 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.04 | atmosphere | 1010 | 90 | < th | dose dependent | rect. | 13 | 18 |
| 7 | 33.26 | temperature | 10 | 270 | > th | dose dependent | sin | 0 | NA |
| 8 | 33.31 | atmosphere | 1010 | 10 | < th | dose dependent | rect. | 14 | 17 |
| 18 | 33.47 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 8 |
| 22 | 33.54 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 13 |
| 46 | 33.89 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 8 |
| 48 | 33.89 | temperature | 15 | 270 | > th | dose dependent | rect. | 9 | 9 |
| 49 | 33.90 | temperature | 30 | 270 | < th | dose dependent | sin | 0 | NA |
| 52 | 33.91 | temperature | 25 | 270 | > th | dose dependent | rect. | 23 | 18 |
| 61 | 33.94 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 15 |
| 78 | 34.03 | atmosphere | 1005 | 90 | < th | dose independent | rect. | 13 | 17 |
| 134 | 34.18 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 10 |
| 164 | 34.24 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 4 |
| 167 | 34.25 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 10 |
| 252 | 34.44 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 2 |
| 294 | 34.53 | temperature | 30 | 720 | < th | dose dependent | sin | 4 | NA |
| 394 | 34.73 | humidity | 80 | 4320 | < th | dose independent | rect. | 18 | 2 |
| 395 | 34.73 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 15 |
| 434 | 34.78 | humidity | 80 | 4320 | > th | dose independent | rect. | 18 | 2 |
| 442 | 34.79 | humidity | 80 | 4320 | > th | dose dependent | rect. | 18 | 3 |
| 456 | 34.81 | temperature | 30 | 270 | < th | dose independent | sin | 1 | NA |
| 465 | 34.81 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 22 |
| 467 | 34.82 | humidity | 90 | 4320 | > th | dose independent | rect. | 6 | 16 |
| 553 | 34.94 | temperature | 30 | 270 | < th | dose independent | rect. | 17 | 22 |
| 554 | 34.94 | humidity | 80 | 14400 | > th | dose dependent | rect. | 20 | 2 |
| 562 | 34.94 | temperature | 10 | 270 | > th | dose dependent | rect. | 9 | 22 |
| 589 | 34.98 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 605 | 34.99 | temperature | 25 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 619 | 35.01 | humidity | 80 | 4320 | > th | dose independent | rect. | 17 | 4 |
| 644 | 35.03 | humidity | 90 | 4320 | > th | dose dependent | rect. | 6 | 4 |
| 721 | 35.11 | humidity | 50 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 747 | 35.13 | humidity | 90 | 4320 | > th | dose dependent | rect. | 6 | 16 |
| 774 | 35.17 | atmosphere | 1010 | 30 | < th | dose dependent | sin | 16 | NA |
| 794 | 35.19 | humidity | 90 | 4320 | > th | dose dependent | rect. | 6 | 7 |
| 848 | 35.25 | humidity | 80 | 4320 | > th | dose independent | rect. | 17 | 6 |
| 856 | 35.26 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 888 | 35.28 | humidity | 90 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 922 | 35.31 | temperature | 30 | 270 | > th | dose independent | rect. | 9 | 7 |
| 929 | 35.31 | temperature | 15 | 30 | > th | dose dependent | rect. | 12 | 8 |
| 935 | 35.32 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 10 |
| 950 | 35.33 | humidity | 90 | 4320 | < th | dose independent | rect. | 6 | 17 |