Os03g0262000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to AtPIP5K1.
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Os03g0262000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to AtPIP5K1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 121.49 | 0.518 | 3.03 | 0.286 | 0.298 | -0.00661 | -0.816 | 4.71 | 0.173 | 21.8 | 27 | 566 | -- | -- |
| 121.93 | 0.514 | 3.08 | -0.21 | 0.276 | 0.582 | -0.67 | -- | 0.121 | 22.3 | 32.8 | 573 | -- | -- |
| 123.73 | 0.518 | 3.04 | 0.21 | 0.296 | 0.0461 | -- | 4.18 | 0.155 | 22.2 | 27.69 | 549 | -- | -- |
| 123.62 | 0.518 | 3.08 | -0.193 | 0.288 | 0.552 | -- | -- | 0.117 | 22.3 | 32.32 | 558 | -- | -- |
| 128.64 | 0.528 | 3.04 | 0.136 | -- | 0.252 | -- | 3.45 | 0.133 | -- | 27.75 | 591 | -- | -- |
| 128.99 | 0.532 | 3.09 | -0.153 | 0.386 | -- | -0.476 | -- | 0.0778 | 21.4 | -- | -- | -- | -- |
| 129.77 | 0.533 | 3.09 | -0.134 | 0.391 | -- | -- | -- | 0.0791 | 21.1 | -- | -- | -- | -- |
| 128.41 | 0.528 | 3.07 | -0.202 | -- | 0.65 | -- | -- | 0.129 | -- | 31.3 | 589 | -- | -- |
| 124.59 | 0.52 | 3.08 | -- | 0.294 | 0.522 | -- | -- | 0.135 | 22.2 | 32.4 | 546 | -- | -- |
| 138.59 | 0.55 | 3.08 | -0.133 | -- | -- | -- | -- | 0.0769 | -- | -- | -- | -- | -- |
| 130.24 | 0.534 | 3.09 | -- | 0.391 | -- | -- | -- | 0.094 | 21.1 | -- | -- | -- | -- |
| 129.45 | 0.53 | 3.07 | -- | -- | 0.628 | -- | -- | 0.147 | -- | 31.88 | 575 | -- | -- |
| 139.06 | 0.55 | 3.08 | -- | -- | -- | -- | -- | 0.0917 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 120.42 | temperature | 25 | 270 | > th | dose dependent | rect. | 15 | 20 |
| 8 | 121.12 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 15 |
| 25 | 121.39 | temperature | 25 | 720 | > th | dose dependent | sin | 3 | NA |
| 29 | 121.42 | temperature | 20 | 720 | > th | dose dependent | sin | 23 | NA |
| 38 | 121.45 | temperature | 25 | 270 | > th | dose dependent | rect. | 15 | 8 |
| 43 | 121.47 | temperature | 25 | 270 | > th | dose dependent | rect. | 15 | 10 |
| 44 | 121.48 | temperature | 25 | 270 | > th | dose dependent | sin | 13 | NA |
| 111 | 121.66 | temperature | 25 | 90 | > th | dose dependent | rect. | 17 | 6 |
| 133 | 121.72 | humidity | 60 | 720 | > th | dose independent | rect. | 11 | 4 |
| 138 | 121.74 | temperature | 25 | 720 | > th | dose dependent | rect. | 8 | 4 |
| 159 | 121.80 | temperature | 25 | 90 | > th | dose dependent | rect. | 17 | 11 |
| 170 | 121.82 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 2 |
| 287 | 122.04 | humidity | 60 | 270 | > th | dose independent | rect. | 12 | 13 |
| 323 | 122.13 | temperature | 10 | 270 | > th | dose dependent | sin | 17 | NA |
| 324 | 122.14 | humidity | 60 | 270 | > th | dose independent | sin | 15 | NA |
| 325 | 122.14 | humidity | 70 | 270 | < th | dose independent | rect. | 16 | 3 |
| 334 | 122.15 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 21 |
| 341 | 122.18 | humidity | 70 | 270 | < th | dose independent | rect. | 17 | 1 |
| 345 | 122.19 | humidity | 50 | 270 | < th | dose independent | rect. | 15 | 1 |
| 352 | 122.20 | temperature | 30 | 270 | > th | dose independent | rect. | 17 | 1 |
| 358 | 122.20 | humidity | 50 | 270 | < th | dose dependent | rect. | 15 | 1 |
| 380 | 122.23 | humidity | 70 | 270 | < th | dose independent | rect. | 16 | 15 |
| 393 | 122.25 | humidity | 60 | 270 | < th | dose independent | rect. | 14 | 6 |
| 410 | 122.26 | humidity | 60 | 270 | < th | dose independent | sin | 15 | NA |
| 433 | 122.31 | temperature | 30 | 270 | > th | dose dependent | rect. | 15 | 1 |
| 434 | 122.32 | temperature | 30 | 270 | > th | dose independent | sin | 12 | NA |
| 466 | 122.35 | temperature | 30 | 270 | > th | dose independent | rect. | 15 | 4 |
| 544 | 122.41 | humidity | 70 | 270 | < th | dose dependent | rect. | 15 | 17 |
| 556 | 122.43 | temperature | 15 | 270 | > th | dose dependent | rect. | 14 | 11 |
| 592 | 122.48 | radiation | 1 | 270 | > th | dose dependent | rect. | 17 | 12 |
| 601 | 122.49 | humidity | 70 | 270 | < th | dose dependent | sin | 13 | NA |
| 616 | 122.51 | humidity | 60 | 720 | > th | dose independent | rect. | 21 | 18 |
| 641 | 122.53 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 642 | 122.53 | humidity | 70 | 270 | < th | dose dependent | rect. | 15 | 5 |
| 661 | 122.54 | radiation | 1 | 270 | > th | dose dependent | rect. | 17 | 1 |
| 770 | 122.64 | humidity | 60 | 270 | < th | dose dependent | sin | 16 | NA |
| 806 | 122.65 | temperature | 30 | 270 | < th | dose independent | sin | 13 | NA |
| 856 | 122.67 | temperature | 20 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 857 | 122.67 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 875 | 122.70 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 2 | 1 |
| 888 | 122.70 | radiation | 30 | 720 | > th | dose independent | rect. | 15 | 17 |
| 920 | 122.72 | temperature | 30 | 90 | < th | dose dependent | sin | 16 | NA |
| 968 | 122.74 | temperature | 30 | 720 | > th | dose dependent | rect. | 13 | 3 |
| 982 | 122.75 | temperature | 20 | 30 | > th | dose independent | rect. | 2 | 1 |
| 984 | 122.75 | wind | 3 | 30 | < th | dose dependent | rect. | 2 | 1 |