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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0260000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Dynamin family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.96 (0.0175) R2 : 0.00124
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0277 (0.0368) R2dN8 : 0.0016 R2N8 : 0.00124
σ : 0.329
deviance : 49.79
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
47.67 0.324 2.97 -0.000719 0.0707 -0.254 0.137 0.845 0.0256 10 1.086 16 -- --
48.1 0.325 2.96 0.0352 0.0737 -0.183 0.182 -- 0.0361 10.4 1.042 16 -- --
47.58 0.324 2.97 0.00578 0.0773 -0.227 -- 0.741 0.0278 9.22 1.086 16 -- --
48.18 0.325 2.96 0.0431 0.0809 -0.167 -- -- 0.0356 8.86 1.016 16 -- --
47.92 0.324 2.97 0.00411 -- -0.234 -- 0.754 0.0281 -- 1.086 16 -- --
49.06 0.328 2.96 0.0614 0.109 -- -0.00455 -- 0.0327 7.12 -- -- -- --
49.06 0.328 2.96 0.0613 0.109 -- -- -- 0.0328 7.14 -- -- -- --
48.55 0.326 2.96 0.042 -- -0.177 -- -- 0.0363 -- 1 16 -- --
48.23 0.325 2.96 -- 0.0806 -0.171 -- -- 0.0309 8.88 1.002 16 -- --
49.69 0.329 2.96 0.0634 -- -- -- -- 0.0347 -- -- -- -- --
49.16 0.328 2.96 -- 0.11 -- -- -- 0.0259 7.1 -- -- -- --
48.6 0.326 2.96 -- -- -0.18 -- -- 0.0317 -- 1 16 -- --
49.79 0.329 2.96 -- -- -- -- -- 0.0277 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 42.64 temperature 20.0 30 > th dose dependent rect. 2 1
2 42.69 temperature 20.0 30 > th dose independent rect. 2 1
4 42.70 atmosphere 1005.0 30 > th dose dependent rect. 2 1
7 42.74 atmosphere 1005.0 30 > th dose independent rect. 2 1
9 42.76 wind 5.0 30 < th dose dependent rect. 2 1
12 42.78 wind 3.0 30 < th dose independent rect. 2 1
18 42.82 temperature 10.0 30 > th dose independent rect. 2 1
20 42.82 temperature 30.0 30 < th dose independent rect. 2 1
21 42.82 humidity 50.0 30 > th dose independent rect. 2 1
26 42.82 atmosphere 1010.0 30 < th dose independent rect. 2 1
28 42.82 radiation 1.0 30 < th dose independent rect. 2 1
33 42.82 precipitation 0.1 30 < th dose independent rect. 2 1
34 42.82 temperature 10.0 30 > th dose independent rect. 3 23
35 42.82 humidity 50.0 30 > th dose dependent rect. 2 1
37 42.82 radiation 1.0 30 < th dose dependent rect. 2 1
42 42.82 precipitation 0.1 30 < th dose dependent rect. 2 1
49 43.04 temperature 25.0 270 > th dose independent rect. 1 1
50 43.04 atmosphere 1015.0 30 < th dose dependent rect. 2 1
54 43.13 temperature 25.0 90 > th dose dependent rect. 1 4
58 43.22 temperature 30.0 30 < th dose dependent rect. 2 1
64 43.35 wind 1.0 30 > th dose independent rect. 2 1
118 44.19 wind 9.0 30 < th dose independent rect. 3 23
119 44.23 wind 9.0 1440 < th dose independent rect. 3 1
120 44.23 temperature 10.0 1440 > th dose independent rect. 3 1
123 44.23 temperature 30.0 1440 < th dose independent rect. 3 1
127 44.23 humidity 50.0 1440 > th dose independent rect. 3 1
136 44.23 atmosphere 995.0 1440 > th dose independent rect. 3 1
137 44.23 radiation 1.0 1440 < th dose independent rect. 3 1
157 44.23 temperature 10.0 1440 > th dose independent rect. 4 23
160 44.23 radiation 1.0 1440 < th dose dependent rect. 3 1
195 44.89 atmosphere 1005.0 30 > th dose dependent rect. 2 3
203 45.10 atmosphere 995.0 30 > th dose independent rect. 3 23
205 45.12 precipitation 0.1 30 < th dose independent rect. 3 23
206 45.12 precipitation 0.1 30 < th dose dependent rect. 3 23
211 45.22 atmosphere 1005.0 270 > th dose dependent rect. 1 1
225 45.62 temperature 25.0 1440 < th dose independent rect. 1 1
289 46.31 wind 1.0 10 > th dose independent rect. 5 23
294 46.33 atmosphere 1005.0 30 > th dose independent rect. 2 3
308 46.40 wind 3.0 30 < th dose dependent rect. 2 3
337 46.56 temperature 30.0 30 < th dose independent rect. 3 23
340 46.58 temperature 20.0 10 > th dose independent rect. 2 3
405 46.88 wind 3.0 30 < th dose independent rect. 2 3
406 46.89 wind 7.0 1440 < th dose independent rect. 5 1
409 46.89 temperature 10.0 1440 > th dose independent rect. 5 1
413 46.89 temperature 30.0 1440 < th dose independent rect. 5 1
417 46.89 humidity 50.0 1440 > th dose independent rect. 5 1
426 46.89 atmosphere 995.0 1440 > th dose independent rect. 5 1
427 46.89 atmosphere 1015.0 1440 < th dose independent rect. 5 1
428 46.89 radiation 20.0 1440 < th dose independent rect. 5 1
437 46.89 wind 9.0 1440 < th dose independent rect. 3 3
438 46.89 temperature 10.0 1440 > th dose independent rect. 3 3
441 46.89 temperature 30.0 1440 < th dose independent rect. 3 3
445 46.89 humidity 50.0 1440 > th dose independent rect. 3 3
454 46.89 atmosphere 995.0 1440 > th dose independent rect. 3 3
455 46.89 radiation 20.0 1440 < th dose independent rect. 3 3
464 46.89 temperature 10.0 1440 > th dose independent rect. 6 21
467 46.89 temperature 10.0 1440 > th dose independent rect. 6 23
480 46.92 humidity 90.0 270 < th dose independent rect. 1 1
484 46.93 humidity 50.0 30 > th dose independent rect. 3 23
611 47.17 humidity 90.0 10 < th dose independent rect. 4 1
617 47.17 humidity 90.0 90 < th dose dependent rect. 4 1
629 47.19 wind 9.0 30 < th dose independent rect. 5 21
635 47.20 humidity 90.0 10 < th dose dependent rect. 4 1
641 47.21 precipitation 0.1 30 < th dose independent rect. 2 3
642 47.21 atmosphere 1000.0 30 > th dose independent rect. 5 21
643 47.21 precipitation 0.1 30 < th dose dependent rect. 2 3
646 47.22 temperature 25.0 10 > th dose independent rect. 4 1
654 47.23 temperature 10.0 30 > th dose independent rect. 2 3
656 47.23 temperature 30.0 30 < th dose independent rect. 2 3
657 47.23 humidity 50.0 30 > th dose independent rect. 2 3
660 47.23 atmosphere 995.0 30 > th dose independent rect. 2 3
662 47.23 atmosphere 1010.0 30 < th dose independent rect. 2 3
664 47.23 radiation 1.0 30 < th dose independent rect. 2 3
670 47.23 temperature 10.0 30 > th dose independent rect. 5 21
672 47.23 precipitation 0.1 30 < th dose independent rect. 5 21
674 47.23 temperature 25.0 30 > th dose dependent rect. 4 1
676 47.23 radiation 10.0 30 < th dose dependent rect. 2 3
684 47.23 precipitation 0.1 30 < th dose dependent rect. 5 21
700 47.26 wind 1.0 30 > th dose independent rect. 5 21
704 47.27 temperature 25.0 720 > th dose independent sin 10 NA
777 47.32 temperature 25.0 720 < th dose independent sin 10 NA
780 47.32 temperature 25.0 720 < th dose independent rect. 21 12
781 47.32 atmosphere 1005.0 10 > th dose dependent rect. 4 1
782 47.32 atmosphere 1005.0 90 > th dose dependent rect. 4 1
785 47.33 wind 1.0 30 > th dose dependent rect. 4 1
797 47.34 temperature 20.0 10 > th dose dependent rect. 23 7
800 47.35 temperature 30.0 10 < th dose independent rect. 5 21
815 47.37 wind 1.0 30 > th dose independent rect. 4 1
816 47.37 wind 5.0 30 < th dose independent rect. 4 1
818 47.37 atmosphere 1005.0 30 > th dose independent rect. 4 1
826 47.37 temperature 30.0 30 < th dose dependent rect. 4 1
838 47.38 temperature 10.0 30 > th dose independent rect. 4 1
840 47.38 temperature 30.0 30 < th dose independent rect. 4 1
841 47.38 humidity 50.0 30 > th dose independent rect. 4 1
846 47.38 atmosphere 995.0 30 > th dose independent rect. 4 1
848 47.38 atmosphere 1010.0 30 < th dose independent rect. 4 1
850 47.38 radiation 1.0 30 < th dose independent rect. 4 1
858 47.38 temperature 10.0 30 > th dose independent rect. 5 23
860 47.38 wind 5.0 30 < th dose dependent rect. 4 1
863 47.38 humidity 50.0 30 > th dose dependent rect. 4 1
866 47.38 radiation 1.0 30 < th dose dependent rect. 4 1
874 47.39 precipitation 0.1 30 < th dose independent rect. 4 1
882 47.39 temperature 10.0 30 > th dose dependent rect. 4 1
886 47.39 atmosphere 1015.0 30 < th dose dependent rect. 4 1
887 47.39 precipitation 0.1 30 < th dose dependent rect. 4 1
889 47.39 humidity 50.0 30 > th dose dependent rect. 2 3
920 47.41 radiation 1.0 10 < th dose independent rect. 2 10
962 47.43 radiation 1.0 10 < th dose independent rect. 2 6
978 47.43 radiation 1.0 10 < th dose dependent rect. 2 10
982 47.43 radiation 10.0 10 < th dose dependent rect. 6 20
989 47.44 wind 1.0 30 > th dose independent rect. 3 23
995 47.44 radiation 1.0 10 < th dose dependent rect. 2 6