Os03g0257000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0257000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 211.81 | 0.684 | 6.54 | 1.51 | 2.62 | -2 | -0.22 | -4.71 | -0.151 | 21.6 | 23.38 | 4312 | -- | -- |
| 227.11 | 0.702 | 6.7 | 0.89 | 2.65 | -1.24 | -0.18 | -- | -0.28 | 21.6 | 32.3 | 6291 | -- | -- |
| 211.98 | 0.678 | 6.54 | 1.52 | 2.62 | -2.01 | -- | -4.73 | -0.151 | 21.6 | 23.39 | 4334 | -- | -- |
| 220.91 | 0.692 | 6.73 | 0.256 | 2.6 | -1.32 | -- | -- | -0.486 | 21.6 | 36.42 | 25550 | -- | -- |
| 566.96 | 1.11 | 6.57 | 1.45 | -- | -2.08 | -- | -3.32 | -0.287 | -- | 29.83 | 2225 | -- | -- |
| 251.05 | 0.743 | 6.63 | 1.37 | 2.63 | -- | -0.213 | -- | -0.015 | 21.7 | -- | -- | -- | -- |
| 251.22 | 0.742 | 6.63 | 1.38 | 2.63 | -- | -- | -- | -0.0147 | 21.7 | -- | -- | -- | -- |
| 490.24 | 1.03 | 6.68 | 0.562 | -- | -3.27 | -- | -- | -0.55 | -- | 32.53 | 745 | -- | -- |
| 216.66 | 0.686 | 6.78 | -- | 2.61 | -1.52 | -- | -- | -0.642 | 21.6 | 54.9 | 32852 | -- | -- |
| 660.48 | 1.2 | 6.56 | 1.4 | -- | -- | -- | -- | -0.019 | -- | -- | -- | -- | -- |
| 301.27 | 0.812 | 6.67 | -- | 2.63 | -- | -- | -- | -0.168 | 21.7 | -- | -- | -- | -- |
| 497.28 | 1.04 | 6.71 | -- | -- | -3.45 | -- | -- | -0.67 | -- | 31.57 | 749 | -- | -- |
| 712.26 | 1.25 | 6.6 | -- | -- | -- | -- | -- | -0.174 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 204.78 | radiation | 1 | 43200 | < th | dose dependent | rect. | 8 | 21 |
| 4 | 205.01 | radiation | 1 | 43200 | < th | dose dependent | rect. | 8 | 11 |
| 5 | 205.01 | radiation | 1 | 43200 | < th | dose dependent | rect. | 8 | 14 |
| 14 | 205.06 | radiation | 40 | 43200 | < th | dose dependent | rect. | 18 | 6 |
| 28 | 205.12 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 30 | 205.13 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 22 |
| 31 | 205.15 | radiation | 40 | 43200 | < th | dose dependent | rect. | 18 | 3 |
| 35 | 205.17 | humidity | 60 | 43200 | < th | dose dependent | rect. | 10 | 2 |
| 57 | 205.21 | radiation | 1 | 43200 | < th | dose dependent | rect. | 22 | 7 |
| 102 | 205.33 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 17 |
| 103 | 205.34 | radiation | 1 | 43200 | < th | dose dependent | rect. | 12 | 17 |
| 107 | 205.36 | radiation | 1 | 43200 | < th | dose dependent | rect. | 12 | 23 |
| 108 | 205.37 | radiation | 1 | 43200 | < th | dose dependent | sin | 20 | NA |
| 110 | 205.38 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 19 |
| 119 | 205.39 | radiation | 1 | 43200 | < th | dose dependent | no | NA | NA |
| 120 | 205.39 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 15 |
| 141 | 205.39 | radiation | 1 | 43200 | < th | dose dependent | rect. | 22 | 21 |
| 185 | 205.45 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 23 |
| 194 | 205.49 | temperature | 20 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 203 | 205.54 | radiation | 1 | 43200 | < th | dose dependent | rect. | 12 | 11 |
| 209 | 205.55 | radiation | 1 | 43200 | < th | dose dependent | rect. | 12 | 7 |
| 210 | 205.55 | radiation | 1 | 43200 | < th | dose dependent | rect. | 12 | 9 |
| 296 | 205.82 | humidity | 70 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 328 | 205.91 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 10 |
| 337 | 205.94 | radiation | 1 | 43200 | < th | dose dependent | rect. | 22 | 16 |
| 351 | 205.97 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 7 |
| 380 | 206.01 | radiation | 1 | 43200 | < th | dose dependent | rect. | 22 | 13 |
| 420 | 206.11 | radiation | 1 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 443 | 206.27 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 465 | 206.37 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 466 | 206.37 | humidity | 70 | 43200 | < th | dose independent | rect. | 2 | 7 |
| 467 | 206.37 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 8 |
| 474 | 206.39 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 481 | 206.40 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 526 | 206.64 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 11 |
| 527 | 206.64 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 15 |
| 559 | 206.72 | humidity | 60 | 43200 | < th | dose dependent | rect. | 5 | 7 |
| 584 | 206.83 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 592 | 206.86 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 600 | 206.92 | humidity | 60 | 43200 | < th | dose independent | rect. | 23 | 12 |
| 630 | 207.02 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 11 |
| 645 | 207.03 | temperature | 20 | 43200 | < th | dose dependent | sin | 8 | NA |
| 648 | 207.05 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 663 | 207.07 | temperature | 20 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 689 | 207.12 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 702 | 207.16 | temperature | 20 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 704 | 207.16 | humidity | 90 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 714 | 207.18 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 1 | 2 |
| 769 | 207.38 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 811 | 207.50 | radiation | 1 | 43200 | < th | dose independent | sin | 19 | NA |
| 813 | 207.50 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 1 | 2 |
| 882 | 207.64 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 3 | 11 |
| 923 | 207.69 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 23 | 4 |
| 924 | 207.69 | atmosphere | 1010 | 43200 | > th | dose dependent | sin | 6 | NA |
| 932 | 207.70 | radiation | 1 | 43200 | < th | dose independent | rect. | 12 | 13 |
| 946 | 207.71 | humidity | 60 | 43200 | > th | dose independent | rect. | 4 | 6 |
| 947 | 207.71 | radiation | 1 | 43200 | < th | dose independent | rect. | 12 | 7 |
| 948 | 207.71 | radiation | 1 | 43200 | < th | dose independent | rect. | 12 | 9 |