FiT-DB / Search/ Help/ Sample detail

Os03g0255400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : FAR1 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.1 (0.0159) R2 : 0.745
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.38 (0.0383) R2dC : 0.738 R2C : 0.731
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.144 (0.0333) R2dN8 : 0.0134 R2N8 : 0.00708
σ : 0.299
deviance : 40.78
__
_____
C
peak time of C : 22.4
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
34.48 0.276 11.1 -0.255 0.937 0.477 0.1 -0.514 0.122 21.6 16.21 9 -- --
34.91 0.275 11.1 -0.262 0.928 0.471 -0.42 -- 0.125 21.6 14.13 8 -- --
34.49 0.274 11.1 -0.254 0.932 0.481 -- -0.445 0.122 21.6 16.21 8 -- --
35.53 0.278 11.1 -0.248 0.926 0.473 -- -- 0.125 21.6 13.15 8 -- --
52.01 0.336 11 -0.3 -- 1.04 -- -0.466 0.118 -- 10.21 3 -- --
38.55 0.291 11.1 -0.266 1.38 -- -0.373 -- 0.115 22.4 -- -- -- --
39.12 0.293 11.1 -0.251 1.39 -- -- -- 0.116 22.4 -- -- -- --
52.96 0.339 11 -0.269 -- 1.04 -- -- 0.13 -- 9.733 2 -- --
37.13 0.284 11.1 -- 0.926 0.476 -- -- 0.151 21.6 14.25 8 -- --
156.6 0.585 11 -0.228 -- -- -- -- 0.12 -- -- -- -- --
40.78 0.299 11.1 -- 1.38 -- -- -- 0.144 22.4 -- -- -- --
54.82 0.345 11 -- -- 1.02 -- -- 0.167 -- 8.514 2 -- --
157.97 0.587 11 -- -- -- -- -- 0.146 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 33.46 atmosphere 995.0 90 > th dose dependent rect. 20 19
7 33.79 atmosphere 995.0 90 > th dose dependent rect. 6 9
8 33.81 radiation 10.0 10 < th dose dependent sin 0 NA
11 33.84 atmosphere 1005.0 30 > th dose independent rect. 20 19
17 33.97 atmosphere 1000.0 90 > th dose dependent rect. 8 7
22 34.00 radiation 20.0 10 < th dose dependent rect. 23 23
29 34.04 radiation 20.0 10 < th dose dependent rect. 1 19
34 34.14 atmosphere 1000.0 10 > th dose dependent rect. 9 7
41 34.22 radiation 20.0 30 < th dose independent rect. 12 8
64 34.37 radiation 20.0 10 < th dose dependent rect. 12 21
67 34.39 atmosphere 1005.0 30 > th dose independent rect. 9 6
69 34.39 radiation 20.0 30 < th dose independent rect. 1 19
76 34.40 radiation 10.0 10 < th dose independent rect. 7 13
86 34.42 atmosphere 1000.0 270 > th dose dependent rect. 15 2
93 34.45 precipitation 0.1 270 < th dose independent rect. 17 22
97 34.45 precipitation 0.1 270 < th dose dependent rect. 17 22
100 34.47 radiation 10.0 10 < th dose independent rect. 10 10
104 34.48 atmosphere 1000.0 30 > th dose dependent rect. 15 5
111 34.49 radiation 30.0 10 < th dose dependent rect. 13 7
124 34.52 temperature 25.0 270 < th dose independent rect. 8 3
127 34.52 radiation 1.0 90 > th dose independent rect. 4 11
150 34.55 humidity 50.0 10 > th dose dependent rect. 1 19
160 34.57 wind 1.0 90 > th dose dependent rect. 15 5
175 34.59 radiation 20.0 10 < th dose dependent rect. 10 23
202 34.63 radiation 20.0 10 < th dose dependent rect. 7 13
204 34.63 atmosphere 1015.0 90 < th dose dependent rect. 1 19
208 34.64 temperature 10.0 270 > th dose dependent rect. 19 4
214 34.65 wind 3.0 90 > th dose independent rect. 15 5
227 34.66 atmosphere 1015.0 270 < th dose dependent rect. 24 17
237 34.68 radiation 20.0 10 < th dose dependent rect. 10 10
239 34.68 atmosphere 1015.0 270 < th dose dependent rect. 23 20
258 34.71 atmosphere 1015.0 10 < th dose dependent rect. 1 19
263 34.72 radiation 20.0 10 < th dose dependent no NA NA
272 34.73 radiation 20.0 10 < th dose dependent rect. 15 23
279 34.75 temperature 25.0 270 < th dose independent rect. 9 1
281 34.75 humidity 70.0 10 > th dose independent rect. 1 19
307 34.79 wind 1.0 270 > th dose dependent rect. 15 2
312 34.80 wind 1.0 270 > th dose independent rect. 15 2
318 34.80 radiation 20.0 10 < th dose dependent rect. 21 23
327 34.82 wind 9.0 270 < th dose independent rect. 15 2
338 34.83 atmosphere 995.0 270 > th dose independent rect. 15 2
339 34.83 radiation 40.0 270 < th dose independent rect. 15 2
343 34.83 temperature 30.0 270 < th dose dependent rect. 6 7
369 34.87 temperature 10.0 270 > th dose independent rect. 15 2
371 34.87 atmosphere 1010.0 270 < th dose independent rect. 15 2
373 34.87 precipitation 0.1 270 < th dose independent rect. 15 2
374 34.87 temperature 30.0 90 < th dose independent rect. 20 19
375 34.87 temperature 10.0 270 > th dose independent rect. 17 22
376 34.87 precipitation 0.1 270 < th dose dependent rect. 15 2
397 34.89 atmosphere 1010.0 270 < th dose independent rect. 23 10
408 34.90 wind 5.0 270 > th dose independent rect. 15 2
414 34.90 atmosphere 1010.0 270 < th dose independent rect. 23 20
415 34.90 temperature 30.0 270 < th dose dependent rect. 9 1
416 34.90 radiation 1.0 4320 < th dose dependent rect. 21 5
417 34.90 temperature 10.0 270 > th dose dependent rect. 18 6
431 34.91 humidity 90.0 10 < th dose dependent rect. 20 20
436 34.92 wind 1.0 90 > th dose independent rect. 1 19
443 34.93 radiation 10.0 10 < th dose independent sin 23 NA
457 34.94 atmosphere 995.0 90 > th dose independent rect. 15 5
467 34.95 humidity 50.0 90 > th dose independent rect. 15 4
470 34.95 radiation 40.0 270 < th dose independent rect. 23 10
473 34.95 temperature 30.0 270 < th dose dependent rect. 7 4
475 34.95 radiation 20.0 10 < th dose dependent rect. 1 16
489 34.97 precipitation 0.1 90 < th dose independent rect. 20 19
498 34.97 precipitation 0.1 90 < th dose dependent rect. 20 19
529 35.00 atmosphere 1010.0 270 < th dose independent rect. 24 18
538 35.01 atmosphere 1005.0 270 > th dose independent rect. 15 1
540 35.01 humidity 50.0 10 > th dose independent rect. 15 5
544 35.01 radiation 10.0 10 < th dose independent rect. 23 23
558 35.02 atmosphere 995.0 10 > th dose independent rect. 15 5
568 35.03 radiation 1.0 90 < th dose independent rect. 5 14
569 35.03 temperature 25.0 270 < th dose dependent rect. 7 2
579 35.04 radiation 1.0 270 < th dose independent rect. 23 19
582 35.05 temperature 30.0 270 < th dose independent rect. 15 2
583 35.05 wind 9.0 90 < th dose independent rect. 15 5
586 35.05 precipitation 0.1 10 < th dose independent rect. 20 19
592 35.05 precipitation 0.1 10 < th dose dependent rect. 20 19
595 35.06 temperature 10.0 90 > th dose independent rect. 15 5
597 35.06 atmosphere 1010.0 90 < th dose independent rect. 15 5
603 35.06 temperature 10.0 90 > th dose independent rect. 20 19
619 35.07 humidity 80.0 10 < th dose independent rect. 7 9
628 35.08 atmosphere 1005.0 90 > th dose independent rect. 15 4
639 35.08 wind 1.0 10 > th dose dependent rect. 15 5
674 35.10 wind 9.0 270 < th dose independent rect. 17 22
677 35.10 radiation 1.0 90 < th dose dependent rect. 5 14
698 35.12 radiation 1.0 90 < th dose independent sin 1 NA
704 35.12 temperature 15.0 10 > th dose independent rect. 20 19
717 35.13 precipitation 0.1 90 < th dose independent rect. 15 5
724 35.13 precipitation 0.1 90 < th dose dependent rect. 15 5
741 35.14 humidity 90.0 10 < th dose dependent rect. 5 11
749 35.15 humidity 50.0 270 > th dose independent rect. 15 2
750 35.15 humidity 90.0 270 < th dose independent rect. 15 2
752 35.15 temperature 10.0 10 > th dose independent rect. 15 5
754 35.15 atmosphere 1010.0 10 < th dose independent rect. 15 5
775 35.16 wind 9.0 90 < th dose independent rect. 20 19
779 35.16 atmosphere 995.0 270 > th dose independent rect. 17 22
781 35.16 temperature 10.0 270 > th dose dependent rect. 20 1
800 35.17 temperature 10.0 1440 > th dose independent rect. 16 5
804 35.17 atmosphere 1005.0 10 > th dose independent rect. 15 5
807 35.17 temperature 10.0 1440 > th dose independent rect. 21 19
813 35.17 humidity 50.0 270 > th dose independent rect. 17 22
823 35.17 radiation 20.0 10 < th dose dependent rect. 7 23
827 35.18 temperature 30.0 90 < th dose independent rect. 15 4
856 35.19 radiation 10.0 10 > th dose independent sin 22 NA
858 35.19 temperature 15.0 270 > th dose independent rect. 19 4
869 35.19 radiation 40.0 270 < th dose dependent rect. 23 10
876 35.20 precipitation 0.1 10 < th dose independent rect. 15 5
884 35.20 precipitation 0.1 10 < th dose dependent rect. 15 5
887 35.20 humidity 50.0 270 > th dose dependent rect. 23 10
925 35.22 atmosphere 995.0 270 > th dose dependent rect. 6 17
945 35.23 humidity 50.0 90 > th dose independent rect. 20 19
946 35.23 humidity 90.0 30 < th dose independent rect. 20 19
967 35.24 radiation 1.0 30 > th dose independent sin 1 NA
999 35.25 temperature 10.0 10 > th dose dependent rect. 20 5