Os03g0255100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Relative to SR12 protein (Fragment).
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Os03g0255100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Relative to SR12 protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 293.54 | 0.805 | 9.61 | -1.44 | 1.73 | -1.36 | 1.75 | 2.62 | -2.06 | 4.44 | 13.54 | 1349 | -- | -- |
| 304.46 | 0.813 | 9.58 | -1.08 | 1.72 | -1.25 | 1.36 | -- | -1.98 | 4.26 | 11.84 | 1390 | -- | -- |
| 301.17 | 0.808 | 9.61 | -1.4 | 1.74 | -1.3 | -- | 2.2 | -2.05 | 4.13 | 13.39 | 1382 | -- | -- |
| 308.85 | 0.819 | 9.59 | -1.11 | 1.76 | -1.22 | -- | -- | -1.97 | 3.91 | 12.27 | 1422 | -- | -- |
| 462.16 | 1 | 9.63 | -1.34 | -- | -1.57 | -- | 2.03 | -2.06 | -- | 13.6 | 1358 | -- | -- |
| 349.19 | 0.876 | 9.53 | -0.991 | 1.82 | -- | 1.46 | -- | -1.69 | 3.9 | -- | -- | -- | -- |
| 355.25 | 0.883 | 9.53 | -1.01 | 1.82 | -- | -- | -- | -1.7 | 3.79 | -- | -- | -- | -- |
| 469.18 | 1.01 | 9.61 | -1.03 | -- | -1.52 | -- | -- | -1.96 | -- | 11.46 | 1373 | -- | -- |
| 337.86 | 0.856 | 9.6 | -- | 1.81 | -1.31 | -- | -- | -1.94 | 3.72 | 10 | 1438 | -- | -- |
| 538.57 | 1.08 | 9.54 | -0.936 | -- | -- | -- | -- | -1.65 | -- | -- | -- | -- | -- |
| 382.22 | 0.915 | 9.51 | -- | 1.8 | -- | -- | -- | -1.58 | 3.79 | -- | -- | -- | -- |
| 493.16 | 1.03 | 9.59 | -- | -- | -1.59 | -- | -- | -1.85 | -- | 10 | 1372 | -- | -- |
| 561.67 | 1.11 | 9.51 | -- | -- | -- | -- | -- | -1.54 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 295.29 | radiation | 10 | 1440 | < th | dose dependent | sin | 22 | NA |
| 2 | 295.31 | radiation | 10 | 1440 | < th | dose dependent | rect. | 7 | 13 |
| 5 | 295.44 | radiation | 10 | 1440 | < th | dose dependent | rect. | 7 | 20 |
| 9 | 295.49 | radiation | 10 | 1440 | < th | dose dependent | rect. | 7 | 18 |
| 15 | 295.86 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 23 | 296.16 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 24 | 296.17 | radiation | 10 | 1440 | > th | dose independent | sin | 1 | NA |
| 31 | 296.22 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 38 | 296.30 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 46 | 296.38 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 12 |
| 64 | 296.44 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 196 | 296.88 | humidity | 90 | 720 | > th | dose independent | rect. | 20 | 3 |
| 211 | 297.07 | radiation | 40 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 216 | 297.24 | humidity | 70 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 274 | 297.69 | humidity | 80 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 296 | 297.77 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 2 |
| 309 | 297.95 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 8 |
| 382 | 298.38 | radiation | 20 | 1440 | < th | dose dependent | rect. | 23 | 18 |
| 386 | 298.39 | radiation | 20 | 1440 | < th | dose dependent | rect. | 2 | 15 |
| 390 | 298.39 | radiation | 20 | 1440 | < th | dose dependent | rect. | 23 | 20 |
| 430 | 298.45 | radiation | 20 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 457 | 298.51 | radiation | 20 | 1440 | < th | dose dependent | no | NA | NA |
| 466 | 298.51 | radiation | 20 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 519 | 298.69 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 675 | 299.24 | radiation | 30 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 702 | 299.41 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 5 |
| 736 | 299.65 | radiation | 20 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 765 | 299.77 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 824 | 299.99 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 22 |
| 893 | 300.16 | radiation | 1 | 1440 | > th | dose dependent | sin | 21 | NA |
| 918 | 300.20 | radiation | 1 | 1440 | > th | dose dependent | rect. | 8 | 9 |
| 982 | 300.28 | radiation | 1 | 1440 | > th | dose dependent | rect. | 8 | 11 |