Os03g0255000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : FAR1 domain containing protein.
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Os03g0255000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : FAR1 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.5 | 0.223 | 11.2 | 0.834 | 0.545 | -0.255 | 0.241 | 4.08 | 0.0753 | 6.75 | 26.4 | 695 | -- | -- |
| 24.33 | 0.23 | 11.2 | 0.296 | 0.652 | 0.257 | -0.149 | -- | -0.0233 | 6.55 | 29.1 | 356 | -- | -- |
| 22.57 | 0.221 | 11.2 | 0.857 | 0.542 | -0.305 | -- | 4.35 | 0.0643 | 6.73 | 27 | 728 | -- | -- |
| 24.18 | 0.229 | 11.2 | 0.282 | 0.631 | 0.263 | -- | -- | -0.0133 | 6.66 | 29.9 | 587 | -- | -- |
| 33.42 | 0.269 | 11.1 | 1.1 | -- | -0.784 | -- | 5.42 | 0.131 | -- | 26.28 | 671 | -- | -- |
| 25.56 | 0.237 | 11.2 | 0.313 | 0.557 | -- | -0.236 | -- | -0.0383 | 6.69 | -- | -- | -- | -- |
| 25.7 | 0.237 | 11.2 | 0.309 | 0.556 | -- | -- | -- | -0.0376 | 6.69 | -- | -- | -- | -- |
| 40.55 | 0.297 | 11.2 | 0.273 | -- | 0.155 | -- | -- | -0.00343 | -- | 29.8 | 5690 | -- | -- |
| 26.14 | 0.238 | 11.2 | -- | 0.653 | 0.315 | -- | -- | -0.046 | 6.65 | 29.9 | 598 | -- | -- |
| 41.83 | 0.302 | 11.2 | 0.322 | -- | -- | -- | -- | -0.0265 | -- | -- | -- | -- | -- |
| 28.21 | 0.248 | 11.2 | -- | 0.56 | -- | -- | -- | -0.072 | 6.66 | -- | -- | -- | -- |
| 42.47 | 0.304 | 11.2 | -- | -- | 0.192 | -- | -- | -0.0275 | -- | 29.43 | 5698 | -- | -- |
| 44.57 | 0.312 | 11.2 | -- | -- | -- | -- | -- | -0.0622 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.28 | wind | 9 | 4320 | < th | dose independent | rect. | 18 | 3 |
| 2 | 21.29 | wind | 9 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 3 | 21.29 | wind | 7 | 4320 | > th | dose dependent | rect. | 20 | 8 |
| 4 | 21.30 | wind | 5 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 7 | 21.36 | wind | 7 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 9 | 21.36 | wind | 7 | 4320 | > th | dose independent | rect. | 20 | 7 |
| 10 | 21.37 | wind | 7 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 11 | 21.37 | wind | 7 | 4320 | < th | dose independent | rect. | 20 | 7 |
| 18 | 21.40 | wind | 9 | 4320 | < th | dose independent | rect. | 18 | 7 |
| 51 | 21.46 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 52 | 21.46 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 151 | 21.58 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 155 | 21.61 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 214 | 21.86 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 22 | 2 |
| 233 | 21.88 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 10 | 10 |
| 255 | 21.89 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 12 | 8 |
| 323 | 21.99 | temperature | 25 | 10 | > th | dose independent | rect. | 1 | 8 |
| 325 | 21.99 | wind | 9 | 4320 | < th | dose independent | rect. | 17 | 17 |
| 351 | 22.04 | temperature | 25 | 4320 | < th | dose independent | rect. | 1 | 2 |
| 359 | 22.05 | wind | 9 | 4320 | < th | dose independent | rect. | 17 | 14 |
| 446 | 22.14 | wind | 9 | 4320 | > th | dose dependent | sin | 11 | NA |
| 475 | 22.17 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 478 | 22.17 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 8 | 4 |
| 491 | 22.21 | temperature | 25 | 4320 | > th | dose independent | rect. | 24 | 1 |
| 504 | 22.22 | wind | 9 | 4320 | < th | dose independent | rect. | 20 | 13 |
| 512 | 22.23 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 530 | 22.24 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 21 | 16 |
| 544 | 22.26 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 553 | 22.26 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 4 | 9 |
| 561 | 22.27 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 3 |
| 563 | 22.27 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 8 | 4 |
| 580 | 22.28 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 21 | 13 |
| 586 | 22.28 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 21 | 16 |
| 594 | 22.29 | wind | 9 | 4320 | < th | dose independent | sin | 12 | NA |
| 635 | 22.31 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 655 | 22.32 | wind | 9 | 4320 | > th | dose independent | sin | 12 | NA |
| 674 | 22.33 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 22 | 2 |
| 695 | 22.34 | atmosphere | 1005 | 14400 | < th | dose independent | sin | 7 | NA |
| 728 | 22.35 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 4 | 9 |
| 755 | 22.36 | atmosphere | 1005 | 14400 | > th | dose independent | sin | 6 | NA |
| 812 | 22.39 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 4 | 1 |