Os03g0254000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NB-ARC domain containing protein.
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Os03g0254000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : NB-ARC domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 99.78 | 0.469 | 10.2 | 1.7 | 2.32 | -1.5 | -0.13 | -2.82 | 0.109 | 7.32 | 1.05 | 4233 | -- | -- |
| 106.18 | 0.48 | 10.2 | 2.15 | 2.07 | -1.39 | 0.155 | -- | 0.164 | 7.16 | 1.686 | 4120 | -- | -- |
| 98.83 | 0.463 | 10.2 | 1.77 | 2.19 | -1.61 | -- | -2.67 | 0.114 | 7.19 | 1.06 | 4172 | -- | -- |
| 105.96 | 0.479 | 10.2 | 2.19 | 2.11 | -1.42 | -- | -- | 0.178 | 7.13 | 1.69 | 4123 | -- | -- |
| 184.11 | 0.632 | 10.2 | 2.21 | -- | -3.77 | -- | -2.99 | 0.298 | -- | 1.691 | 5186 | -- | -- |
| 136.36 | 0.547 | 10.2 | 1.98 | 2.43 | -- | 0.17 | -- | -0.0274 | 7.64 | -- | -- | -- | -- |
| 136.44 | 0.547 | 10.2 | 1.98 | 2.44 | -- | -- | -- | -0.0277 | 7.64 | -- | -- | -- | -- |
| 186.01 | 0.635 | 10 | 3.46 | -- | -3.42 | -- | -- | 0.55 | -- | 1.131 | 3788 | -- | -- |
| 192.93 | 0.647 | 10.2 | -- | 2.26 | -1.6 | -- | -- | 0.193 | 7.37 | 8.351 | 8449 | -- | -- |
| 455.29 | 0.997 | 10.2 | 2.02 | -- | -- | -- | -- | 0.00868 | -- | -- | -- | -- | -- |
| 240.01 | 0.725 | 10.2 | -- | 2.45 | -- | -- | -- | -0.248 | 7.58 | -- | -- | -- | -- |
| 286.5 | 0.788 | 10.2 | -- | -- | -3.6 | -- | -- | 0.318 | -- | 2.144 | 3762 | -- | -- |
| 562.46 | 1.11 | 10.3 | -- | -- | -- | -- | -- | -0.215 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 93.96 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 2 | 94.16 | temperature | 20.0 | 270 | > th | dose dependent | sin | 11 | NA |
| 4 | 95.34 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 6 |
| 5 | 95.34 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 6 |
| 6 | 95.36 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 6 |
| 8 | 95.56 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 9 |
| 14 | 95.60 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 21 | 95.74 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 24 | 96.07 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 3 |
| 25 | 96.07 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 3 |
| 28 | 96.12 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 3 |
| 33 | 96.19 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 35 | 96.25 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 19 | 12 |
| 38 | 96.28 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 39 | 96.28 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 89 | 96.78 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 15 | 11 |
| 90 | 96.79 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 16 | 2 |
| 91 | 96.79 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 17 | NA |
| 96 | 96.81 | temperature | 25.0 | 720 | < th | dose independent | rect. | 18 | 4 |
| 100 | 96.83 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 17 | 13 |
| 123 | 96.96 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 16 | 7 |
| 133 | 96.98 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 16 | 13 |
| 168 | 97.10 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 9 | 9 |
| 200 | 97.21 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 16 | 13 |
| 222 | 97.24 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 223 | 97.24 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 225 | 97.25 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 242 | 97.31 | radiation | 1.0 | 14400 | < th | dose independent | sin | 16 | NA |
| 307 | 97.48 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 9 | 21 |
| 333 | 97.55 | radiation | 1.0 | 14400 | > th | dose independent | sin | 16 | NA |
| 343 | 97.57 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 9 | 15 |
| 389 | 97.63 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 9 | 9 |
| 393 | 97.64 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 12 | 7 |
| 405 | 97.65 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 10 | 9 |
| 407 | 97.66 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 9 | 21 |
| 468 | 97.78 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 22 |
| 574 | 97.97 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 601 | 98.04 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 603 | 98.05 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 16 | 2 |
| 625 | 98.11 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 15 | 19 |
| 638 | 98.13 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 15 | 11 |
| 648 | 98.15 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 15 | 15 |
| 666 | 98.20 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 5 | 13 |
| 683 | 98.21 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 22 | 20 |
| 685 | 98.21 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 19 | 23 |
| 739 | 98.29 | precipitation | 0.1 | 43200 | > th | dose independent | sin | 18 | NA |
| 752 | 98.30 | precipitation | 0.1 | 43200 | < th | dose independent | sin | 18 | NA |
| 755 | 98.30 | precipitation | 0.1 | 43200 | < th | dose dependent | sin | 18 | NA |
| 781 | 98.33 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 15 | 19 |
| 829 | 98.38 | radiation | 1.0 | 14400 | < th | dose independent | no | NA | NA |
| 888 | 98.41 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 15 | 4 |
| 890 | 98.41 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 15 | 7 |
| 986 | 98.54 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 5 | 13 |