Os03g0253800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Mitochondrial TIM21 family protein.
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Os03g0253800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Mitochondrial TIM21 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.62 | 0.228 | 9.96 | 1.04 | 0.831 | 0.829 | -0.277 | 0.837 | -0.0257 | 18.3 | 20.5 | 12 | -- | -- |
| 24.02 | 0.23 | 9.95 | 1.07 | 0.826 | 0.568 | -0.315 | -- | -0.0201 | 18.4 | 20.85 | 11 | -- | -- |
| 23.8 | 0.227 | 9.96 | 1.05 | 0.83 | 0.822 | -- | 0.836 | -0.0262 | 18.3 | 20.6 | 12 | -- | -- |
| 24.22 | 0.229 | 9.95 | 1.08 | 0.827 | 0.567 | -- | -- | -0.0175 | 18.4 | 21.1 | 6 | -- | -- |
| 59.44 | 0.359 | 9.94 | 1.03 | -- | 0.637 | -- | 0.448 | -0.0483 | -- | 20.6 | 12 | -- | -- |
| 26.55 | 0.242 | 9.96 | 0.976 | 0.819 | -- | -0.331 | -- | -0.0649 | 18.6 | -- | -- | -- | -- |
| 26.83 | 0.243 | 9.96 | 0.981 | 0.817 | -- | -- | -- | -0.066 | 18.6 | -- | -- | -- | -- |
| 59.51 | 0.361 | 9.94 | 1.04 | -- | 0.512 | -- | -- | -0.0437 | -- | 20.8 | 10 | -- | -- |
| 32.74 | 0.266 | 10 | -- | 0.817 | -0.71 | -- | -- | -0.388 | 18.6 | 34.4 | 47520 | -- | -- |
| 61.65 | 0.367 | 9.94 | 0.961 | -- | -- | -- | -- | -0.0826 | -- | -- | -- | -- | -- |
| 52.17 | 0.338 | 9.99 | -- | 0.805 | -- | -- | -- | -0.175 | 18.7 | -- | -- | -- | -- |
| 67.5 | 0.383 | 10 | -- | -- | -0.692 | -- | -- | -0.396 | -- | 45.25 | 47520 | -- | -- |
| 86.02 | 0.433 | 9.97 | -- | -- | -- | -- | -- | -0.189 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.70 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 8 |
| 7 | 22.94 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 20 |
| 9 | 22.96 | temperature | 20 | 270 | > th | dose independent | rect. | 7 | 18 |
| 19 | 23.04 | humidity | 50 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 25 | 23.15 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 9 |
| 26 | 23.15 | temperature | 20 | 90 | > th | dose independent | rect. | 19 | 21 |
| 37 | 23.23 | temperature | 20 | 30 | > th | dose independent | rect. | 11 | 15 |
| 44 | 23.26 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 17 |
| 48 | 23.29 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 21 |
| 50 | 23.30 | temperature | 20 | 90 | > th | dose independent | rect. | 21 | 16 |
| 72 | 23.38 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 20 |
| 97 | 23.45 | temperature | 20 | 270 | < th | dose dependent | rect. | 11 | 17 |
| 119 | 23.50 | temperature | 20 | 270 | < th | dose dependent | rect. | 13 | 15 |
| 125 | 23.51 | temperature | 20 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 141 | 23.53 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 7 |
| 142 | 23.53 | temperature | 20 | 720 | < th | dose dependent | rect. | 8 | 16 |
| 154 | 23.54 | temperature | 20 | 10 | < th | dose dependent | rect. | 15 | 19 |
| 161 | 23.55 | temperature | 20 | 270 | < th | dose dependent | sin | 15 | NA |
| 162 | 23.55 | temperature | 20 | 10 | < th | dose dependent | rect. | 12 | 18 |
| 172 | 23.56 | temperature | 20 | 10 | < th | dose dependent | rect. | 15 | 17 |
| 194 | 23.58 | temperature | 20 | 10 | < th | dose dependent | rect. | 15 | 15 |
| 221 | 23.60 | temperature | 20 | 10 | < th | dose dependent | rect. | 23 | 22 |
| 230 | 23.61 | temperature | 20 | 10 | < th | dose dependent | rect. | 17 | 17 |
| 235 | 23.61 | temperature | 20 | 270 | < th | dose dependent | rect. | 6 | 22 |
| 279 | 23.65 | temperature | 20 | 720 | < th | dose independent | rect. | 8 | 16 |
| 282 | 23.65 | temperature | 20 | 720 | < th | dose dependent | rect. | 15 | 9 |
| 297 | 23.66 | temperature | 20 | 270 | < th | dose dependent | rect. | 22 | 5 |
| 302 | 23.66 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 17 |
| 307 | 23.67 | temperature | 20 | 720 | < th | dose dependent | rect. | 21 | 3 |
| 313 | 23.68 | temperature | 20 | 90 | < th | dose independent | rect. | 22 | 22 |
| 314 | 23.68 | temperature | 20 | 30 | < th | dose dependent | sin | 10 | NA |
| 342 | 23.70 | temperature | 20 | 270 | < th | dose independent | rect. | 11 | 17 |
| 410 | 23.73 | temperature | 20 | 270 | < th | dose independent | rect. | 6 | 22 |
| 432 | 23.73 | temperature | 20 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 434 | 23.74 | temperature | 20 | 90 | > th | dose independent | sin | 13 | NA |
| 439 | 23.74 | temperature | 20 | 10 | < th | dose dependent | no | NA | NA |
| 456 | 23.74 | temperature | 20 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 457 | 23.74 | temperature | 20 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 477 | 23.75 | temperature | 20 | 30 | < th | dose dependent | rect. | 23 | 11 |
| 489 | 23.75 | temperature | 20 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 490 | 23.75 | temperature | 20 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 508 | 23.76 | temperature | 20 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 530 | 23.77 | temperature | 20 | 10 | < th | dose dependent | rect. | 23 | 9 |
| 590 | 23.79 | temperature | 20 | 90 | < th | dose independent | sin | 12 | NA |
| 599 | 23.79 | temperature | 20 | 10 | < th | dose dependent | rect. | 23 | 7 |
| 612 | 23.79 | temperature | 20 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 625 | 23.80 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 8 |
| 629 | 23.80 | radiation | 1 | 720 | < th | dose dependent | rect. | 8 | 9 |
| 644 | 23.81 | temperature | 20 | 90 | < th | dose independent | rect. | 14 | 19 |
| 705 | 23.83 | temperature | 20 | 720 | < th | dose dependent | rect. | 22 | 1 |
| 910 | 23.91 | temperature | 20 | 90 | < th | dose independent | rect. | 22 | 7 |
| 975 | 23.93 | temperature | 20 | 90 | < th | dose independent | no | NA | NA |
| 988 | 23.93 | temperature | 20 | 90 | < th | dose independent | rect. | 9 | 23 |