Os03g0253500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : D111/G-patch domain containing protein.
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Os03g0253500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : D111/G-patch domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.32 | 0.283 | 9.3 | 0.749 | 0.354 | -1.2 | -0.362 | 2.38 | 0.199 | 9.97 | 21.73 | 261 | -- | -- |
| 39.17 | 0.292 | 9.34 | 0.334 | 0.383 | -1.07 | -0.463 | -- | 0.0806 | 8.88 | 18.31 | 266 | -- | -- |
| 36.81 | 0.283 | 9.3 | 0.735 | 0.345 | -1.2 | -- | 2.36 | 0.199 | 10 | 21.67 | 272 | -- | -- |
| 39.76 | 0.294 | 9.34 | 0.329 | 0.408 | -1.1 | -- | -- | 0.0863 | 9.52 | 18.68 | 230 | -- | -- |
| 39.56 | 0.293 | 9.29 | 0.871 | -- | -1.31 | -- | 2.74 | 0.236 | -- | 21.73 | 491 | -- | -- |
| 57.56 | 0.356 | 9.38 | 0.0788 | 0.629 | -- | -0.495 | -- | -0.101 | 6.98 | -- | -- | -- | -- |
| 58.2 | 0.357 | 9.38 | 0.0697 | 0.628 | -- | -- | -- | -0.0993 | 7 | -- | -- | -- | -- |
| 44.45 | 0.311 | 9.35 | 0.378 | -- | -1.22 | -- | -- | 0.12 | -- | 18.87 | 493 | -- | -- |
| 42.19 | 0.303 | 9.36 | -- | 0.421 | -0.946 | -- | -- | 0.0311 | 9.21 | 20.15 | 218 | -- | -- |
| 78.93 | 0.415 | 9.39 | 0.0824 | -- | -- | -- | -- | -0.0878 | -- | -- | -- | -- | -- |
| 58.32 | 0.357 | 9.38 | -- | 0.629 | -- | -- | -- | -0.107 | 6.99 | -- | -- | -- | -- |
| 47.63 | 0.321 | 9.36 | -- | -- | -1.07 | -- | -- | 0.0575 | -- | 20.63 | 475 | -- | -- |
| 79.11 | 0.415 | 9.4 | -- | -- | -- | -- | -- | -0.0969 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.16 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 22 |
| 9 | 36.84 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 13 | 36.91 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 23 |
| 14 | 36.97 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 22 | 37.23 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 72 | 38.46 | temperature | 20 | 720 | > th | dose dependent | rect. | 14 | 21 |
| 78 | 38.53 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 4 |
| 83 | 38.57 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 2 |
| 84 | 38.57 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 112 | 38.77 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 5 |
| 116 | 38.79 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 7 |
| 180 | 39.04 | temperature | 20 | 1440 | > th | dose dependent | sin | 14 | NA |
| 182 | 39.04 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 218 | 39.14 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 236 | 39.22 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 251 | 39.26 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 268 | 39.32 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 300 | 39.41 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 23 |
| 368 | 39.60 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 20 |
| 388 | 39.65 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 8 |
| 470 | 39.81 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 612 | 40.03 | temperature | 20 | 720 | > th | dose dependent | sin | 3 | NA |
| 652 | 40.08 | temperature | 25 | 1440 | > th | dose dependent | sin | 22 | NA |
| 901 | 40.40 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 943 | 40.45 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 960 | 40.45 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |