Os03g0253200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os03g0253200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 375.16 | 0.91 | 4.31 | 1.04 | 0.308 | -2.18 | -2.93 | -3.34 | 0.243 | 13 | 21.6 | 2766 | 23.9 | -- |
| 395.22 | 0.926 | 4.19 | 2.03 | 0.608 | -2.08 | -2.65 | -- | 0.529 | 12.6 | 21.6 | 2383 | 1.67 | -- |
| 394.94 | 0.926 | 4.32 | 0.794 | 0.824 | -2.1 | -- | -3.33 | 0.123 | 12 | 21.6 | 2164 | 0.671 | -- |
| 417.71 | 0.952 | 4.15 | 1.95 | 0.804 | -2.29 | -- | -- | 0.46 | 11.1 | 21.5 | 2046 | 0.785 | -- |
| 413.15 | 0.947 | 4.3 | 0.813 | -- | -1.91 | -- | -2.79 | 0.189 | -- | 21.7 | 1412 | 0.657 | -- |
| 541.12 | 1.09 | 4.34 | 1.07 | 0.369 | -- | -2.8 | -- | -0.224 | 13 | -- | -- | -- | -- |
| 573.79 | 1.12 | 4.35 | 0.965 | 0.373 | -- | -- | -- | -0.24 | 12.7 | -- | -- | -- | -- |
| 433.34 | 0.97 | 4.2 | 1.77 | -- | -1.88 | -- | -- | 0.414 | -- | 21.5 | 1414 | 1.38 | -- |
| 501.01 | 1.04 | 4.21 | -- | 0.688 | -1.71 | -- | -- | 0.233 | 11.4 | 21.6 | 2030 | 0.721 | -- |
| 582.48 | 1.13 | 4.35 | 0.951 | -- | -- | -- | -- | -0.246 | -- | -- | -- | -- | -- |
| 598.32 | 1.14 | 4.37 | -- | 0.358 | -- | -- | -- | -0.347 | 12.6 | -- | -- | -- | -- |
| 500.88 | 1.04 | 4.28 | -- | -- | -1.27 | -- | -- | 0.137 | -- | 21.9 | 1441 | 3.83 | -- |
| 606.34 | 1.15 | 4.38 | -- | -- | -- | -- | -- | -0.352 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 362.10 | wind | 1 | 14400 | < th | dose dependent | rect. | 20 | 12 |
| 16 | 366.57 | wind | 1 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 17 | 366.70 | wind | 1 | 14400 | < th | dose dependent | rect. | 20 | 16 |
| 22 | 367.41 | wind | 1 | 14400 | < th | dose dependent | sin | 10 | NA |
| 36 | 369.12 | wind | 3 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 38 | 369.18 | wind | 3 | 14400 | < th | dose dependent | rect. | 5 | 3 |
| 50 | 370.18 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 20 |
| 51 | 370.22 | wind | 1 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 57 | 370.65 | wind | 3 | 43200 | < th | dose dependent | rect. | 22 | 2 |
| 78 | 372.34 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 20 |
| 80 | 372.42 | wind | 1 | 14400 | < th | dose independent | rect. | 20 | 13 |
| 83 | 372.47 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 87 | 372.63 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 19 | 3 |
| 91 | 372.92 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 20 |
| 94 | 373.00 | wind | 1 | 14400 | > th | dose independent | rect. | 20 | 12 |
| 96 | 373.14 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 103 | 373.32 | wind | 3 | 43200 | < th | dose dependent | rect. | 22 | 4 |
| 109 | 373.62 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 22 |
| 110 | 373.67 | wind | 1 | 14400 | < th | dose dependent | rect. | 3 | 6 |
| 114 | 373.80 | wind | 3 | 14400 | < th | dose dependent | rect. | 4 | 11 |
| 123 | 374.10 | wind | 3 | 14400 | < th | dose dependent | rect. | 13 | 19 |
| 124 | 374.12 | wind | 1 | 14400 | > th | dose independent | rect. | 20 | 19 |
| 126 | 374.16 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 22 |
| 178 | 375.53 | wind | 1 | 14400 | < th | dose independent | rect. | 20 | 18 |
| 201 | 376.01 | wind | 3 | 14400 | < th | dose dependent | rect. | 5 | 9 |
| 203 | 376.03 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 22 |
| 204 | 376.04 | wind | 1 | 14400 | < th | dose dependent | rect. | 1 | 23 |
| 216 | 376.24 | wind | 1 | 14400 | < th | dose independent | rect. | 20 | 16 |
| 233 | 376.41 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 15 |
| 324 | 377.87 | wind | 1 | 14400 | < th | dose dependent | no | NA | NA |
| 375 | 378.54 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 23 |
| 380 | 378.62 | wind | 3 | 14400 | < th | dose dependent | rect. | 5 | 7 |
| 395 | 378.87 | wind | 1 | 14400 | < th | dose dependent | rect. | 23 | 23 |
| 422 | 379.21 | wind | 1 | 14400 | > th | dose independent | rect. | 10 | 23 |
| 519 | 380.57 | wind | 1 | 14400 | > th | dose independent | no | NA | NA |
| 522 | 380.59 | wind | 1 | 14400 | < th | dose independent | sin | 9 | NA |
| 524 | 380.61 | wind | 1 | 14400 | < th | dose dependent | rect. | 6 | 23 |
| 543 | 380.82 | wind | 1 | 14400 | < th | dose independent | rect. | 1 | 23 |
| 553 | 380.89 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 12 | 12 |
| 583 | 381.24 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 12 |
| 584 | 381.24 | humidity | 50 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 601 | 381.47 | wind | 1 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 605 | 381.48 | wind | 1 | 14400 | < th | dose independent | rect. | 10 | 23 |
| 614 | 381.58 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 5 |
| 624 | 381.69 | wind | 1 | 14400 | > th | dose independent | sin | 9 | NA |
| 651 | 381.91 | atmosphere | 1015 | 43200 | < th | dose independent | sin | 15 | NA |
| 667 | 382.06 | wind | 1 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 742 | 382.71 | wind | 1 | 14400 | < th | dose independent | no | NA | NA |
| 757 | 382.87 | wind | 1 | 14400 | > th | dose independent | rect. | 3 | 6 |
| 763 | 382.92 | wind | 1 | 14400 | < th | dose independent | rect. | 20 | 6 |
| 781 | 383.11 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 12 |
| 843 | 383.70 | wind | 1 | 14400 | < th | dose independent | rect. | 12 | 23 |
| 924 | 384.41 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 9 | 3 |
| 931 | 384.45 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 945 | 384.54 | wind | 1 | 14400 | > th | dose independent | sin | 2 | NA |
| 997 | 384.94 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 4 | 9 |