Os03g0249200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Class I peptide chain release factor domain containing protein.
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Os03g0249200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Class I peptide chain release factor domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.53 | 0.272 | 12.8 | -0.901 | 1.52 | -0.547 | 0.416 | -0.313 | -0.27 | 8.48 | 20.1 | 1358 | -- | -- |
| 33.62 | 0.27 | 12.8 | -0.853 | 1.52 | -0.487 | 0.49 | -- | -0.269 | 8.45 | 20.59 | 1355 | -- | -- |
| 33.99 | 0.272 | 12.8 | -0.886 | 1.51 | -0.527 | -- | -0.28 | -0.266 | 8.47 | 20.4 | 1316 | -- | -- |
| 34.14 | 0.272 | 12.8 | -0.85 | 1.52 | -0.478 | -- | -- | -0.26 | 8.46 | 20.5 | 1311 | -- | -- |
| 152.71 | 0.576 | 12.9 | -0.884 | -- | -0.612 | -- | -0.164 | -0.188 | -- | 25.2 | 2142 | -- | -- |
| 38.75 | 0.292 | 12.8 | -1.05 | 1.52 | -- | 0.467 | -- | -0.364 | 8.53 | -- | -- | -- | -- |
| 39.45 | 0.294 | 12.8 | -1.04 | 1.52 | -- | -- | -- | -0.364 | 8.53 | -- | -- | -- | -- |
| 151.03 | 0.572 | 12.8 | -0.825 | -- | -0.755 | -- | -- | -0.133 | -- | 25.2 | 2114 | -- | -- |
| 38.92 | 0.291 | 12.8 | -- | 1.52 | -0.865 | -- | -- | -0.0492 | 8.52 | 18.03 | 47335 | -- | -- |
| 169.38 | 0.608 | 12.9 | -1.03 | -- | -- | -- | -- | -0.35 | -- | -- | -- | -- | -- |
| 67.93 | 0.386 | 12.8 | -- | 1.52 | -- | -- | -- | -0.249 | 8.58 | -- | -- | -- | -- |
| 164.83 | 0.598 | 12.8 | -- | -- | -0.956 | -- | -- | 0.0224 | -- | 25.25 | 2121 | -- | -- |
| 197.55 | 0.656 | 12.9 | -- | -- | -- | -- | -- | -0.235 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.46 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 23 | 15 |
| 2 | 31.54 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 23 | 6 |
| 3 | 31.57 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 22 | 17 |
| 4 | 31.58 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 10 |
| 8 | 31.67 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 21 |
| 9 | 31.71 | temperature | 20.0 | 10 | > th | dose independent | rect. | 1 | 4 |
| 14 | 31.74 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 23 | 18 |
| 18 | 31.79 | temperature | 20.0 | 90 | > th | dose independent | rect. | 23 | 6 |
| 19 | 31.80 | temperature | 20.0 | 270 | > th | dose independent | rect. | 23 | 3 |
| 21 | 31.87 | radiation | 1.0 | 90 | < th | dose independent | rect. | 23 | 18 |
| 25 | 31.91 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 8 |
| 26 | 31.91 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 18 |
| 27 | 31.92 | radiation | 1.0 | 30 | > th | dose independent | sin | 6 | NA |
| 29 | 31.93 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 9 | 20 |
| 31 | 31.96 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 34 | 31.99 | humidity | 80.0 | 90 | > th | dose independent | rect. | 23 | 6 |
| 51 | 32.13 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 53 | 32.14 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 23 | 7 |
| 54 | 32.15 | radiation | 1.0 | 90 | < th | dose independent | rect. | 23 | 8 |
| 61 | 32.17 | temperature | 20.0 | 270 | > th | dose independent | rect. | 22 | 17 |
| 69 | 32.21 | temperature | 30.0 | 10 | < th | dose independent | rect. | 5 | 7 |
| 79 | 32.28 | radiation | 1.0 | 90 | < th | dose dependent | sin | 7 | NA |
| 87 | 32.32 | radiation | 1.0 | 30 | < th | dose independent | sin | 6 | NA |
| 88 | 32.32 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 23 | 3 |
| 101 | 32.37 | radiation | 1.0 | 30 | < th | dose dependent | sin | 5 | NA |
| 143 | 32.54 | humidity | 80.0 | 270 | > th | dose independent | rect. | 23 | 3 |
| 156 | 32.60 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 23 | 6 |
| 182 | 32.69 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 23 | 7 |
| 220 | 32.82 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 1 | 4 |
| 229 | 32.85 | temperature | 30.0 | 90 | < th | dose independent | rect. | 5 | 18 |
| 252 | 32.91 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 20 | 8 |
| 260 | 32.93 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 23 | 6 |
| 281 | 32.96 | wind | 9.0 | 90 | < th | dose independent | rect. | 23 | 6 |
| 283 | 32.96 | temperature | 10.0 | 90 | > th | dose independent | rect. | 23 | 6 |
| 284 | 32.96 | temperature | 30.0 | 90 | < th | dose independent | rect. | 23 | 6 |
| 285 | 32.96 | humidity | 50.0 | 90 | > th | dose independent | rect. | 23 | 6 |
| 292 | 32.96 | temperature | 10.0 | 90 | > th | dose independent | rect. | 5 | 18 |
| 293 | 32.96 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 23 | 3 |
| 308 | 32.98 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 20 | 8 |
| 320 | 33.00 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 20 | 12 |
| 321 | 33.00 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 5 | 18 |
| 325 | 33.01 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 5 | 18 |
| 334 | 33.01 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 336 | 33.02 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 24 | 4 |
| 342 | 33.03 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 344 | 33.03 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 24 | 4 |
| 352 | 33.04 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 381 | 33.07 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 20 | 12 |
| 422 | 33.11 | temperature | 20.0 | 1440 | > th | dose independent | sin | 11 | NA |
| 428 | 33.11 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 14 | 9 |
| 441 | 33.12 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 24 | 8 |
| 519 | 33.19 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 537 | 33.20 | temperature | 20.0 | 1440 | < th | dose independent | sin | 10 | NA |
| 550 | 33.21 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 23 | 6 |
| 551 | 33.21 | temperature | 20.0 | 270 | > th | dose independent | rect. | 7 | 10 |
| 556 | 33.21 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 23 | 6 |
| 590 | 33.24 | wind | 9.0 | 90 | < th | dose dependent | rect. | 23 | 6 |
| 627 | 33.27 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 14 | 9 |
| 649 | 33.29 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 18 | 4 |
| 656 | 33.29 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 19 |
| 660 | 33.29 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 19 |
| 694 | 33.32 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 8 |
| 700 | 33.32 | temperature | 30.0 | 10 | < th | dose independent | rect. | 5 | 19 |
| 702 | 33.32 | temperature | 20.0 | 270 | > th | dose independent | rect. | 7 | 21 |
| 761 | 33.37 | humidity | 80.0 | 10 | > th | dose independent | rect. | 23 | 6 |
| 765 | 33.37 | wind | 9.0 | 90 | < th | dose independent | rect. | 5 | 18 |
| 846 | 33.44 | wind | 9.0 | 270 | < th | dose dependent | rect. | 23 | 3 |
| 855 | 33.45 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 23 | 6 |
| 874 | 33.46 | radiation | 1.0 | 30 | < th | dose independent | rect. | 1 | 15 |
| 906 | 33.48 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 5 | 18 |
| 958 | 33.52 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 23 | 3 |
| 966 | 33.52 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 21 |
| 975 | 33.52 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 21 |
| 992 | 33.53 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 19 |
| 996 | 33.53 | wind | 3.0 | 270 | < th | dose dependent | rect. | 23 | 3 |