Os03g0248500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cupredoxin domain containing protein.
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Os03g0248500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cupredoxin domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 199.43 | 0.664 | 2.94 | 0.464 | 0.325 | 0.446 | -0.232 | -0.0502 | 0.134 | 14.6 | 23.6 | 26 | -- | -- |
| 199.42 | 0.658 | 2.95 | 0.445 | 0.325 | 0.445 | -0.204 | -- | 0.129 | 14.6 | 23.7 | 31 | -- | -- |
| 199.56 | 0.658 | 2.95 | 0.44 | 0.323 | 0.447 | -- | 0.0294 | 0.13 | 14.5 | 23.67 | 31 | -- | -- |
| 199.56 | 0.658 | 2.95 | 0.44 | 0.325 | 0.446 | -- | -- | 0.129 | 14.6 | 23.67 | 31 | -- | -- |
| 204.11 | 0.665 | 2.98 | 0.213 | -- | 0.387 | -- | 0.527 | 0.0157 | -- | 22.6 | 59 | -- | -- |
| 213.43 | 0.685 | 2.99 | 0.254 | 0.187 | -- | -0.234 | -- | -0.0636 | 15.1 | -- | -- | -- | -- |
| 213.61 | 0.684 | 2.99 | 0.249 | 0.187 | -- | -- | -- | -0.065 | 15.2 | -- | -- | -- | -- |
| 204.27 | 0.669 | 2.96 | 0.409 | -- | 0.4 | -- | -- | 0.0711 | -- | 22.7 | 44 | -- | -- |
| 204.33 | 0.666 | 2.96 | -- | 0.296 | 0.38 | -- | -- | 0.0542 | 14.6 | 23.61 | 31 | -- | -- |
| 215.58 | 0.686 | 2.99 | 0.241 | -- | -- | -- | -- | -0.0699 | -- | -- | -- | -- | -- |
| 215.24 | 0.686 | 3 | -- | 0.182 | -- | -- | -- | -0.0927 | 15.2 | -- | -- | -- | -- |
| 208.42 | 0.675 | 2.97 | -- | -- | 0.34 | -- | -- | 0.00723 | -- | 22.7 | 44 | -- | -- |
| 217.11 | 0.688 | 3 | -- | -- | -- | -- | -- | -0.0966 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 192.19 | wind | 5.0 | 90 | > th | dose independent | rect. | 7 | 1 |
| 3 | 192.28 | wind | 5.0 | 30 | > th | dose dependent | rect. | 7 | 1 |
| 23 | 193.05 | wind | 5.0 | 10 | > th | dose independent | rect. | 7 | 1 |
| 42 | 193.57 | radiation | 20.0 | 90 | > th | dose independent | rect. | 6 | 1 |
| 57 | 193.57 | radiation | 20.0 | 90 | > th | dose dependent | rect. | 6 | 1 |
| 71 | 194.96 | radiation | 1.0 | 10 | < th | dose independent | rect. | 7 | 5 |
| 73 | 194.96 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 7 | 5 |
| 75 | 195.04 | radiation | 1.0 | 90 | < th | dose independent | rect. | 10 | 1 |
| 77 | 195.04 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 10 | 1 |
| 96 | 196.26 | radiation | 1.0 | 10 | < th | dose independent | rect. | 11 | 1 |
| 113 | 196.26 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 11 | 1 |
| 183 | 199.07 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 10 | 22 |
| 188 | 199.79 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 3 | 22 |
| 190 | 199.82 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 6 | 11 |
| 196 | 199.97 | radiation | 1.0 | 10 | < th | dose independent | rect. | 11 | 5 |
| 203 | 200.03 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 3 | 20 |
| 206 | 200.06 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 209 | 200.15 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 210 | 200.16 | humidity | 80.0 | 90 | < th | dose dependent | rect. | 6 | 2 |
| 213 | 200.25 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 218 | 200.27 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 219 | 200.28 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 6 | 14 |
| 225 | 200.36 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 14 | 1 |
| 228 | 200.38 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 6 | 14 |
| 233 | 200.49 | temperature | 25.0 | 270 | < th | dose dependent | no | NA | NA |
| 248 | 200.65 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 18 | 23 |
| 259 | 200.79 | wind | 1.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 289 | 201.16 | temperature | 25.0 | 90 | < th | dose dependent | sin | 22 | NA |
| 297 | 201.18 | temperature | 25.0 | 90 | < th | dose independent | rect. | 14 | 1 |
| 301 | 201.22 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 304 | 201.23 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 6 | 18 |
| 305 | 201.23 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 351 | 201.64 | humidity | 80.0 | 90 | < th | dose independent | rect. | 6 | 1 |
| 352 | 201.64 | temperature | 20.0 | 90 | < th | dose independent | rect. | 6 | 14 |
| 353 | 201.64 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 354 | 201.65 | temperature | 25.0 | 10 | < th | dose dependent | sin | 22 | NA |
| 361 | 201.68 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 20 | 2 |
| 365 | 201.72 | humidity | 80.0 | 90 | < th | dose dependent | rect. | 3 | 5 |
| 368 | 201.73 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 11 | 5 |
| 376 | 201.77 | temperature | 20.0 | 90 | < th | dose independent | rect. | 6 | 1 |
| 378 | 201.78 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 14 | 20 |
| 382 | 201.79 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 391 | 201.83 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 11 | 5 |
| 415 | 201.94 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 416 | 201.94 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 417 | 201.94 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 20 | 2 |
| 433 | 202.06 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 6 | 22 |
| 448 | 202.14 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 12 | 1 |
| 452 | 202.16 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 462 | 202.22 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 482 | 202.32 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 11 | 10 |
| 483 | 202.32 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 4 | 22 |
| 486 | 202.35 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 12 | 5 |
| 509 | 202.44 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 513 | 202.46 | atmosphere | 1005.0 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 538 | 202.56 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 540 | 202.56 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 10 | 1 |
| 552 | 202.59 | wind | 9.0 | 14400 | > th | dose independent | rect. | 4 | 9 |
| 557 | 202.61 | wind | 1.0 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 561 | 202.61 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 565 | 202.62 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 4 |
| 568 | 202.63 | atmosphere | 1005.0 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 576 | 202.65 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 577 | 202.65 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 21 | 2 |
| 611 | 202.76 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 20 | 3 |
| 659 | 202.87 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 666 | 202.89 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 4 | 1 |
| 688 | 202.95 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 689 | 202.96 | temperature | 20.0 | 270 | < th | dose independent | rect. | 5 | 17 |
| 695 | 202.97 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 697 | 202.97 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 21 | 2 |
| 704 | 202.99 | wind | 7.0 | 4320 | > th | dose independent | rect. | 20 | 7 |
| 713 | 203.01 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 729 | 203.07 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 732 | 203.09 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 7 |
| 741 | 203.12 | wind | 1.0 | 1440 | < th | dose independent | rect. | 20 | 2 |
| 748 | 203.13 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 6 | 8 |
| 755 | 203.14 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 6 |
| 759 | 203.15 | temperature | 20.0 | 10 | > th | dose dependent | no | NA | NA |
| 790 | 203.22 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 800 | 203.25 | atmosphere | 1005.0 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 801 | 203.25 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 3 | 11 |
| 815 | 203.28 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 820 | 203.29 | atmosphere | 1005.0 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 844 | 203.34 | wind | 9.0 | 14400 | < th | dose independent | rect. | 4 | 9 |
| 845 | 203.34 | temperature | 25.0 | 30 | < th | dose independent | rect. | 5 | 23 |
| 846 | 203.34 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 850 | 203.35 | temperature | 20.0 | 30 | < th | dose independent | rect. | 13 | 7 |
| 858 | 203.37 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 884 | 203.41 | wind | 9.0 | 14400 | < th | dose independent | rect. | 2 | 11 |
| 905 | 203.44 | wind | 3.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 909 | 203.45 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 928 | 203.49 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 942 | 203.51 | temperature | 20.0 | 270 | > th | dose independent | sin | 23 | NA |
| 943 | 203.51 | wind | 9.0 | 14400 | > th | dose independent | rect. | 10 | 3 |
| 961 | 203.54 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 998 | 203.59 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 5 | 1 |