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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0247500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, uncharacterized transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.29 (0.0184) R2 : 0.000565
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0197 (0.0388) R2dN8 : 0.000729 R2N8 : 0.000565
σ : 0.347
deviance : 55.41
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
51.01 0.336 2.97 -0.68 0.129 -29.6 -0.173 -65 -0.0111 6.43 14.96 1353 -- --
51.71 0.337 3.29 -0.0646 0.127 1.16 -0.131 -- -0.023 6.99 14.59 1897 -- --
51.08 0.333 2.97 -0.681 0.129 -29.8 -- -65.5 -0.0112 6.7 14.95 1353 -- --
51.34 0.334 3.29 -0.00346 0.131 1.11 -- -- -0.00769 6.43 15.01 1361 -- --
51.94 0.336 2.97 -0.688 -- -29.9 -- -65.5 -0.00873 -- 14.96 1354 -- --
54.28 0.345 3.29 -0.11 0.123 -- -0.13 -- -0.0349 6.15 -- -- -- --
54.32 0.345 3.29 -0.111 0.122 -- -- -- -0.0343 6.46 -- -- -- --
52.01 0.337 3.29 -0.0367 -- 1.11 -- -- -0.0132 -- 16.08 7604 -- --
51.33 0.334 3.28 -- 0.133 1.11 -- -- -0.00687 6.71 15.01 1357 -- --
55.1 0.347 3.29 -0.108 -- -- -- -- -0.0317 -- -- -- -- --
54.65 0.346 3.29 -- 0.121 -- -- -- -0.0219 6.52 -- -- -- --
52.04 0.337 3.29 -- -- 1.14 -- -- -0.00895 -- 16.08 7604 -- --
55.41 0.347 3.29 -- -- -- -- -- -0.0197 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 48.51 temperature 15.0 30 > th dose independent rect. 3 23
3 49.06 humidity 80.0 10 < th dose independent rect. 6 2
5 49.18 radiation 10.0 30 > th dose independent rect. 7 1
9 49.46 humidity 80.0 10 < th dose independent rect. 2 6
10 49.46 humidity 80.0 10 < th dose independent rect. 24 8
31 50.01 atmosphere 1005.0 90 > th dose dependent rect. 2 1
32 50.04 radiation 1.0 43200 < th dose dependent rect. 3 1
35 50.14 temperature 15.0 10 > th dose independent rect. 8 23
36 50.18 temperature 15.0 90 > th dose independent rect. 8 23
37 50.18 temperature 20.0 30 > th dose dependent rect. 2 1
39 50.23 temperature 20.0 30 > th dose independent rect. 2 1
45 50.28 atmosphere 1005.0 30 > th dose independent rect. 2 1
49 50.31 wind 3.0 30 < th dose dependent rect. 2 1
57 50.35 wind 3.0 30 < th dose independent rect. 2 1
63 50.37 humidity 90.0 30 > th dose independent rect. 2 1
72 50.38 wind 9.0 1440 < th dose independent rect. 3 1
73 50.38 temperature 10.0 1440 > th dose independent rect. 3 1
76 50.38 temperature 30.0 1440 < th dose independent rect. 3 1
80 50.38 humidity 50.0 1440 > th dose independent rect. 3 1
89 50.38 atmosphere 995.0 1440 > th dose independent rect. 3 1
90 50.38 radiation 1.0 1440 < th dose independent rect. 3 1
110 50.38 temperature 15.0 1440 > th dose independent rect. 8 14
111 50.38 temperature 10.0 1440 > th dose independent rect. 4 23
124 50.41 humidity 60.0 30 > th dose dependent rect. 2 1
131 50.43 temperature 10.0 30 > th dose independent rect. 2 1
133 50.43 temperature 30.0 30 < th dose independent rect. 2 1
134 50.43 humidity 50.0 30 > th dose independent rect. 2 1
138 50.43 atmosphere 1010.0 30 < th dose independent rect. 2 1
140 50.43 radiation 1.0 30 < th dose independent rect. 2 1
145 50.43 precipitation 0.1 30 < th dose independent rect. 2 1
147 50.43 radiation 1.0 30 < th dose dependent rect. 2 1
152 50.43 precipitation 0.1 30 < th dose dependent rect. 2 1
153 50.45 wind 1.0 1440 > th dose independent rect. 2 1
158 50.57 temperature 15.0 10 > th dose independent rect. 14 12
160 50.61 wind 1.0 1440 < th dose dependent rect. 2 1
161 50.61 atmosphere 1015.0 30 < th dose dependent rect. 2 1
164 50.62 temperature 15.0 270 > th dose independent rect. 19 23
180 50.64 temperature 15.0 720 > th dose independent rect. 13 2
183 50.65 humidity 90.0 1440 > th dose dependent rect. 11 3
186 50.68 temperature 15.0 1440 > th dose independent rect. 8 20
188 50.69 atmosphere 1000.0 30 > th dose independent rect. 3 23
191 50.71 wind 1.0 1440 < th dose independent rect. 2 1
192 50.71 temperature 15.0 270 > th dose independent rect. 21 13
193 50.72 humidity 90.0 1440 > th dose independent rect. 11 3
195 50.73 wind 1.0 30 > th dose independent rect. 2 1
197 50.73 temperature 30.0 30 < th dose dependent rect. 2 1
200 50.74 temperature 15.0 720 > th dose independent rect. 8 7
213 50.81 temperature 15.0 1440 > th dose independent rect. 16 12
218 50.82 temperature 15.0 1440 > th dose independent rect. 10 18
229 50.85 temperature 20.0 720 < th dose independent rect. 11 5
236 50.87 wind 1.0 14400 < th dose dependent rect. 2 1
238 50.88 wind 9.0 30 < th dose independent rect. 3 23
239 50.89 temperature 15.0 1440 > th dose independent rect. 9 1
240 50.89 atmosphere 1015.0 1440 < th dose independent rect. 24 8
244 50.90 temperature 15.0 1440 > th dose independent rect. 18 10
251 50.91 temperature 20.0 720 < th dose dependent rect. 10 9
254 50.93 temperature 15.0 1440 > th dose independent rect. 10 12
256 50.93 temperature 15.0 4320 < th dose dependent rect. 4 1
257 50.94 precipitation 0.1 1440 < th dose independent rect. 9 4
259 50.94 temperature 20.0 720 < th dose dependent rect. 11 3
260 50.94 precipitation 0.1 1440 < th dose dependent rect. 9 4
266 50.95 temperature 20.0 720 < th dose dependent rect. 10 6
272 50.97 radiation 1.0 1440 > th dose independent rect. 8 1
273 50.97 radiation 1.0 720 < th dose independent rect. 10 3
276 50.97 temperature 15.0 10 > th dose independent rect. 21 23
278 50.97 radiation 1.0 720 < th dose dependent rect. 10 3
280 50.97 humidity 80.0 1440 > th dose dependent rect. 8 6
285 50.98 temperature 15.0 720 > th dose independent rect. 12 8
286 50.98 radiation 20.0 4320 < th dose independent rect. 22 8
287 50.98 temperature 15.0 90 > th dose independent rect. 21 9
288 50.98 temperature 15.0 720 > th dose independent rect. 3 17
292 50.98 humidity 90.0 1440 > th dose dependent rect. 8 9
299 51.00 humidity 90.0 1440 < th dose independent rect. 8 6
309 51.01 humidity 90.0 1440 < th dose independent rect. 10 4
311 51.01 temperature 15.0 1440 < th dose independent rect. 18 9
318 51.01 temperature 15.0 90 > th dose independent rect. 21 23
323 51.01 temperature 15.0 1440 < th dose dependent rect. 21 6
324 51.01 temperature 15.0 1440 < th dose dependent rect. 19 10
325 51.02 temperature 15.0 1440 < th dose independent sin 15 NA
337 51.02 temperature 15.0 1440 < th dose dependent sin 12 NA
362 51.03 temperature 15.0 1440 < th dose independent rect. 20 6
367 51.03 temperature 15.0 1440 < th dose independent rect. 9 17
373 51.03 temperature 15.0 1440 < th dose independent rect. 5 20
380 51.03 temperature 15.0 1440 < th dose dependent rect. 22 4
397 51.03 temperature 15.0 1440 < th dose dependent rect. 9 19
410 51.03 temperature 15.0 1440 < th dose dependent rect. 6 21
418 51.03 temperature 15.0 1440 < th dose dependent rect. 4 22
427 51.03 temperature 15.0 1440 < th dose dependent rect. 2 23
438 51.04 precipitation 0.1 1440 > th dose independent rect. 10 3
450 51.04 temperature 15.0 1440 < th dose dependent no NA NA
452 51.04 precipitation 0.1 1440 > th dose dependent rect. 10 3
495 51.04 temperature 15.0 1440 < th dose dependent rect. 21 23
512 51.05 humidity 90.0 720 > th dose dependent rect. 10 7
524 51.06 temperature 15.0 1440 > th dose independent sin 16 NA
554 51.07 temperature 15.0 1440 > th dose independent rect. 21 1
578 51.08 temperature 15.0 1440 > th dose independent sin 22 NA
613 51.09 humidity 90.0 1440 > th dose independent rect. 8 9
635 51.09 temperature 15.0 1440 < th dose dependent rect. 2 20
639 51.10 temperature 15.0 1440 > th dose independent rect. 10 5
649 51.10 temperature 15.0 1440 < th dose dependent sin 0 NA
659 51.11 temperature 15.0 1440 < th dose independent sin 0 NA
660 51.11 radiation 1.0 720 < th dose independent rect. 9 6
661 51.11 temperature 15.0 1440 > th dose independent rect. 10 7
663 51.11 temperature 15.0 1440 > th dose independent rect. 4 12
669 51.11 temperature 15.0 1440 > th dose independent rect. 10 23
672 51.11 radiation 1.0 720 < th dose dependent rect. 9 6
678 51.11 temperature 15.0 1440 < th dose dependent rect. 3 17
685 51.12 temperature 15.0 1440 < th dose independent sin 21 NA
688 51.12 temperature 15.0 4320 > th dose independent rect. 8 3
697 51.12 temperature 15.0 1440 < th dose independent rect. 4 17
721 51.12 temperature 15.0 1440 < th dose dependent rect. 4 15
728 51.13 temperature 15.0 90 > th dose independent sin 7 NA
730 51.13 temperature 15.0 90 > th dose independent sin 18 NA
752 51.13 temperature 15.0 1440 > th dose independent rect. 11 3
763 51.13 temperature 15.0 720 > th dose independent rect. 13 21
768 51.13 temperature 15.0 1440 < th dose dependent rect. 24 1
793 51.14 humidity 90.0 1440 > th dose independent rect. 8 6
819 51.14 temperature 10.0 30 > th dose dependent rect. 3 23
827 51.15 radiation 1.0 1440 > th dose independent rect. 8 6
829 51.15 precipitation 0.1 720 > th dose independent rect. 9 8
848 51.15 temperature 15.0 720 < th dose dependent sin 20 NA
863 51.16 temperature 15.0 90 > th dose independent no NA NA
865 51.16 temperature 15.0 90 < th dose independent sin 7 NA
915 51.16 temperature 15.0 90 < th dose independent no NA NA
917 51.16 temperature 15.0 1440 < th dose independent rect. 5 1
919 51.16 temperature 15.0 1440 < th dose independent rect. 9 1
922 51.16 atmosphere 1015.0 1440 > th dose independent rect. 1 1