FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0246100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glycoside hydrolase, family 17 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.39 (0.0269) R2 : 0.00122
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0424 (0.0567) R2dN8 : 0.00158 R2N8 : 0.00122
σ : 0.507
deviance : 118.14
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
107.68 0.488 3.38 0.0731 0.175 0.812 -0.567 0.76 0.148 4.97 23.9 852 -- --
108.39 0.485 3.36 0.194 0.171 0.729 -0.596 -- 0.173 4.54 24.13 852 -- --
108.48 0.485 3.37 0.0627 0.181 0.801 -- 0.788 0.151 5.25 23.9 868 -- --
109.22 0.487 3.36 0.189 0.175 0.689 -- -- 0.17 5.54 24.1 846 -- --
110 0.488 3.38 0.0764 -- 0.804 -- 0.766 0.155 -- 23.91 807 -- --
115.75 0.504 3.39 -0.0053 0.199 -- -0.387 -- 0.0363 6.25 -- -- -- --
115.95 0.504 3.39 -0.00803 0.203 -- -- -- 0.0384 7.21 -- -- -- --
110.69 0.49 3.36 0.192 -- 0.7 -- -- 0.176 -- 24.1 770 -- --
110.02 0.489 3.37 -- 0.175 0.617 -- -- 0.142 5.67 24.1 846 -- --
118.14 0.508 3.39 -0.00434 -- -- -- -- 0.0419 -- -- -- -- --
115.96 0.504 3.39 -- 0.203 -- -- -- 0.0393 7.21 -- -- -- --
111.54 0.492 3.37 -- -- 0.621 -- -- 0.142 -- 24.1 763 -- --
118.14 0.507 3.39 -- -- -- -- -- 0.0424 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 94.35 radiation 40.0 43200 < th dose dependent rect. 23 1
10 96.19 temperature 25.0 30 > th dose independent rect. 22 1
11 96.21 wind 9.0 1440 < th dose independent rect. 23 1
12 96.21 temperature 10.0 1440 > th dose independent rect. 23 1
15 96.21 temperature 30.0 1440 < th dose independent rect. 23 1
19 96.21 humidity 50.0 1440 > th dose independent rect. 23 1
29 96.21 atmosphere 995.0 1440 > th dose independent rect. 23 1
30 96.21 radiation 1.0 1440 < th dose independent rect. 23 1
50 96.21 temperature 10.0 1440 > th dose independent rect. 24 23
53 96.21 radiation 1.0 1440 < th dose dependent rect. 23 1
60 96.44 temperature 20.0 30 > th dose dependent rect. 22 1
63 96.76 humidity 80.0 30 > th dose independent rect. 22 1
64 96.76 atmosphere 1005.0 30 > th dose dependent rect. 22 1
65 96.77 wind 3.0 30 < th dose independent rect. 22 1
67 96.87 humidity 90.0 30 < th dose independent rect. 22 1
70 97.04 atmosphere 1005.0 30 > th dose independent rect. 22 1
72 97.18 wind 5.0 30 < th dose dependent rect. 22 1
76 97.23 precipitation 0.1 30 < th dose independent rect. 22 1
77 97.23 precipitation 0.1 30 < th dose dependent rect. 22 1
78 97.24 wind 1.0 30 > th dose independent rect. 22 1
82 97.29 temperature 10.0 30 > th dose independent rect. 22 1
84 97.29 temperature 30.0 30 < th dose independent rect. 22 1
85 97.29 humidity 50.0 30 > th dose independent rect. 22 1
89 97.29 atmosphere 1010.0 30 < th dose independent rect. 22 1
91 97.29 radiation 1.0 30 < th dose independent rect. 22 1
96 97.29 temperature 10.0 30 > th dose independent rect. 23 23
97 97.29 humidity 50.0 30 > th dose dependent rect. 22 1
98 97.29 radiation 1.0 30 < th dose dependent rect. 22 1
108 97.92 atmosphere 1015.0 30 < th dose dependent rect. 22 1
109 98.00 humidity 90.0 30 < th dose dependent rect. 22 1
112 98.16 wind 1.0 30 > th dose dependent rect. 22 1
118 99.08 temperature 30.0 30 < th dose dependent rect. 22 1
123 99.50 precipitation 0.1 720 < th dose independent rect. 15 8
124 99.50 precipitation 0.1 720 < th dose dependent rect. 15 8
125 99.54 temperature 10.0 720 > th dose independent rect. 3 8
126 99.54 atmosphere 995.0 720 > th dose independent rect. 3 8
127 99.54 temperature 10.0 720 > th dose independent rect. 11 16
128 99.54 atmosphere 995.0 720 > th dose independent rect. 23 16
129 99.59 humidity 50.0 720 > th dose independent rect. 3 8
130 99.62 wind 9.0 720 < th dose independent rect. 3 8
133 99.80 temperature 10.0 720 > th dose independent rect. 15 8
134 99.80 temperature 10.0 720 > th dose independent rect. 23 16
165 100.70 wind 9.0 30 < th dose independent rect. 23 23
168 100.91 precipitation 0.1 720 < th dose independent rect. 11 16
169 100.91 precipitation 0.1 720 < th dose dependent rect. 11 16
170 101.03 atmosphere 995.0 720 > th dose independent rect. 11 16
173 101.42 atmosphere 995.0 720 > th dose independent rect. 15 8
175 101.56 atmosphere 1015.0 720 < th dose independent rect. 3 8
178 101.78 precipitation 0.1 720 < th dose independent rect. 3 8
179 101.78 precipitation 0.1 720 < th dose dependent rect. 3 8
181 101.97 atmosphere 1000.0 30 > th dose independent rect. 23 23
183 102.08 radiation 1.0 43200 < th dose dependent rect. 3 1
185 102.20 precipitation 0.1 30 < th dose independent rect. 23 23
186 102.20 precipitation 0.1 30 < th dose dependent rect. 23 23
191 102.58 atmosphere 1000.0 30 > th dose independent rect. 3 23
192 102.61 precipitation 0.1 720 < th dose independent rect. 23 16
193 102.61 precipitation 0.1 720 < th dose dependent rect. 23 16
195 102.69 atmosphere 1005.0 90 > th dose dependent rect. 2 1
198 102.78 precipitation 0.1 1440 < th dose independent rect. 23 1
199 102.78 precipitation 0.1 1440 < th dose dependent rect. 23 1
202 102.86 wind 1.0 30 < th dose dependent rect. 2 1
204 102.98 atmosphere 1010.0 30 < th dose dependent rect. 2 1
205 103.05 wind 1.0 10 < th dose independent rect. 2 1
207 103.07 wind 5.0 10 < th dose dependent rect. 2 1
212 103.11 wind 5.0 10 < th dose independent rect. 2 1
220 103.20 radiation 40.0 720 < th dose independent rect. 15 8
224 103.21 temperature 10.0 10 > th dose dependent rect. 2 1
227 103.22 temperature 10.0 10 > th dose independent rect. 2 1
229 103.22 temperature 25.0 10 < th dose independent rect. 2 1
231 103.22 humidity 50.0 10 > th dose independent rect. 2 1
234 103.22 humidity 90.0 10 > th dose independent rect. 2 1
235 103.22 atmosphere 995.0 10 > th dose independent rect. 2 1
236 103.22 atmosphere 1010.0 10 < th dose independent rect. 2 1
238 103.22 radiation 1.0 10 < th dose independent rect. 2 1
243 103.22 precipitation 0.1 10 < th dose independent rect. 2 1
244 103.22 temperature 10.0 10 > th dose independent rect. 3 23
249 103.22 humidity 50.0 10 > th dose dependent rect. 2 1
250 103.22 radiation 1.0 10 < th dose dependent rect. 2 1
255 103.22 precipitation 0.1 10 < th dose dependent rect. 2 1
257 103.23 temperature 30.0 30 < th dose dependent rect. 2 1
295 103.28 atmosphere 1005.0 10 > th dose dependent rect. 2 1
299 103.30 atmosphere 995.0 30 > th dose dependent rect. 2 1
302 103.32 atmosphere 1005.0 30 > th dose independent rect. 2 1
310 103.40 wind 1.0 30 > th dose independent rect. 2 1
317 103.53 precipitation 0.1 30 < th dose independent rect. 3 23
318 103.53 precipitation 0.1 30 < th dose dependent rect. 3 23
331 103.95 wind 9.0 30 < th dose independent rect. 3 23
343 104.04 wind 9.0 1440 < th dose independent rect. 3 1
344 104.04 temperature 10.0 1440 > th dose independent rect. 3 1
347 104.04 temperature 30.0 1440 < th dose independent rect. 3 1
351 104.04 humidity 50.0 1440 > th dose independent rect. 3 1
360 104.04 atmosphere 995.0 1440 > th dose independent rect. 3 1
361 104.04 radiation 1.0 1440 < th dose independent rect. 3 1
381 104.04 temperature 10.0 1440 > th dose independent rect. 4 23
399 104.46 wind 1.0 30 > th dose independent rect. 23 23
400 104.50 wind 1.0 720 > th dose independent rect. 15 8
401 104.55 temperature 20.0 720 > th dose dependent rect. 3 1
408 104.72 wind 9.0 720 < th dose independent rect. 15 8
417 105.21 temperature 25.0 270 > th dose independent rect. 19 8
421 105.40 humidity 50.0 30 > th dose independent rect. 3 23
427 105.67 temperature 10.0 720 > th dose dependent rect. 3 8
428 105.67 temperature 25.0 720 < th dose dependent rect. 24 8
429 105.72 temperature 25.0 720 < th dose dependent rect. 1 6
433 105.74 temperature 20.0 720 > th dose dependent rect. 3 6
438 105.83 humidity 50.0 30 > th dose independent rect. 23 23
440 105.88 temperature 10.0 720 > th dose dependent rect. 3 6
443 105.91 temperature 20.0 720 > th dose independent rect. 3 2
452 106.00 humidity 50.0 720 > th dose independent rect. 23 16
470 106.15 temperature 10.0 30 > th dose dependent rect. 3 23
473 106.21 wind 9.0 720 < th dose independent rect. 23 16
492 106.36 temperature 20.0 720 > th dose dependent rect. 3 8
497 106.39 temperature 25.0 720 < th dose dependent sin 7 NA
508 106.46 temperature 20.0 720 > th dose independent rect. 3 12
518 106.49 temperature 10.0 30 > th dose dependent rect. 23 23
532 106.57 temperature 20.0 720 < th dose independent rect. 3 3
560 106.73 temperature 20.0 720 < th dose independent rect. 3 5
561 106.74 temperature 20.0 720 > th dose independent rect. 3 6
569 106.77 temperature 10.0 720 > th dose dependent rect. 23 10
589 106.85 temperature 20.0 720 > th dose dependent rect. 23 12
602 106.92 temperature 10.0 720 > th dose dependent rect. 23 12
614 106.97 temperature 10.0 720 > th dose dependent rect. 23 7
636 107.05 temperature 20.0 720 > th dose dependent rect. 23 10
638 107.06 temperature 20.0 720 > th dose independent rect. 3 17
687 107.24 temperature 20.0 30 > th dose dependent rect. 22 5
688 107.24 temperature 10.0 90 > th dose dependent rect. 3 16
694 107.26 temperature 25.0 270 > th dose dependent rect. 19 8
706 107.29 temperature 30.0 720 < th dose independent rect. 15 8
724 107.35 wind 1.0 10 < th dose independent rect. 14 13
736 107.39 wind 1.0 10 < th dose independent rect. 17 10
750 107.42 wind 1.0 10 < th dose independent rect. 21 6
777 107.50 temperature 10.0 720 > th dose dependent rect. 21 14
823 107.62 humidity 90.0 90 < th dose independent rect. 2 1
855 107.72 temperature 20.0 720 < th dose independent sin 6 NA
859 107.72 temperature 15.0 30 > th dose dependent rect. 3 19
915 107.85 temperature 10.0 720 > th dose dependent rect. 23 16
926 107.88 temperature 25.0 720 > th dose independent rect. 8 1